CX301562

Overview
NameCX301562
Unique NameCX301562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301562 vs. ExPASy Swiss-Prot
Match: TEN3_DANRE (Teneurin-3 OS=Danio rerio GN=odz3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 54/190 (28.42%), Postives = 70/190 (36.84%), Query Frame = 3
Query:   57 QSACPNGCNGHGSCGTND-QCTCYNRIDGEPAWVNADCSARTCPKSAA---------------WVGSVQNSNDAHPVVECSNKGICDRKTGECQCFPNYDGIACERTVCPNRCSDSGIC-FSQNQLATDAGKTYTTPWDSEKEVGCVCDPGRRGPDCSLIE---CPSGPDVMG-GYGNEAGRDCSGRGLC 563
            ++ CP+ C+GHG+  T    CTC      +  W   DCS   C                    W GSV +    HP   C+  G C  K G+C+C   + G  C    CP  C+ +G C   QN             W       CVC PG RG  C +     C  G D  G G  +    DC  +  C
Sbjct:  535 KTMCPDQCSGHGTYQTESGTCTC------DTNWTGPDCSIEVCAVDCGSHGVCIGGSCRCEEGWTGSVCDLKACHP--RCTEHGTC--KDGKCECHQGWTGEHCTVEGCPGLCNSNGRCTLDQNG------------WH------CVCQPGWRGAGCDVAMETLCADGKDSEGDGLVDCMDPDCCLQSSC 696          

HSP 2 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 52/206 (25.24%), Postives = 72/206 (34.95%), Query Frame = 3
Query:   66 CPNGCNGHGSCGTNDQCTCYNRIDGEPAWVNADCSARTCPKSAA---------------WVGSVQNSNDAHPV-VECSNKGICDRKTGECQCFPNYDGIACERTVCPN-RCSDSGICFSQNQLATDAGKTYTTPWDSEKEVGCVCDPGRRGPDCSLIE--CPSGPDVMGGYGNEAGRDCSGRGLCDYSSGICNCFHGYYGTKCEFQ 626
            CP+ C+G+G C T   C C+      P ++  DCS   CP   +               W G+  +      + + CS  GIC    G C C   Y G  CE   C +  CS  G+C                         C C+PG  G +C +++  CP                CSG G     SG C C   + G  C  +
Sbjct:  408 CPHNCHGNGDCRTGT-CHCF------PGFLGPDCSRAACPVLCSGNGQYSRGRCLCYSGWKGTECDVPSNQCIDIHCSGHGICIM--GTCACNTGYKGDNCEEVDCLDPSCSSHGVCIHGE---------------------CHCNPGWGGNNCEILKTMCPD--------------QCSGHGTYQTESGTCTCDTNWTGPDCSIE 569          
BLAST of CX301562 vs. ExPASy Swiss-Prot
Match: MEGF6_HUMAN (Multiple epidermal growth factor-like domains protein 6 OS=Homo sapiens GN=MEGF6 PE=2 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 59/199 (29.65%), Postives = 72/199 (36.18%), Query Frame = 3
Query:   60 SACPNGCNGHGSCGTNDQCTCYNRIDGEPAWVNADCSARTCPKSAAWVGSVQNSNDAHPVVECSNKGICDRKTGECQCFPNYDGIACERTVCPN-----RCSDSGICFSQNQLATDAGKTYTTPWDSEKEVGCVCDPGRRGPDCSLIECPSGPDVMGGYGNEAGRDCS-GRGLCDYSSGICNCFHGYYGTKCEFQTVLG 638
            S+C   C G    G   QC C       P     DC A  CP+    +G      +  P   C +   CD +TG C C P + G  C+  VCP       C     C +        G     P  +       CD G  GPDCS   C                +CS G G CD  SG+C C  GY G +CE Q   G
Sbjct:  742 SSC--SCGGAPCHGVTGQCRC------PPGRTGEDCEA-DCPEGRWGLGC----QEICPA--CQHAARCDPETGACLCLPGFVGSRCQ-DVCPAGWYGPSCQTRCSCANDGHCHPATGHCSCAPGWTGFSCQRACDTGHWGPDCSH-PC----------------NCSAGHGSCDAISGLCLCEAGYVGPRCEQQCPQG 907          

HSP 2 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 59/206 (28.64%), Postives = 77/206 (37.38%), Query Frame = 3
Query:   57 QSACPNGCNGHGSCGTNDQCTCYNRIDGE-------PAWVNADCSARTCPKSAAWVGSVQNSNDAHPVVECSNKGICDRKTGECQCFPNYDGIACERTV--------CPNRCSDS---GICFSQNQLATDAGKTYTTPWDSEKEVGCVCDPGRRGPDCSLIECPSGPDVMGGYGNEAGRDCSGRGLCDYSSGICNCFHGYYGTKCE 620
            ++ CP G  G G       C    R D E       P +V + C    CP  A W G    +        C+N G C   TG C C P + G +C+R          C + C+ S   G C + + L                   C+C+ G  GP C   +CP G     G G E    C     CD+ SG C C  G+ GT CE
Sbjct:  770 EADCPEGRWGLGCQEICPACQHAARCDPETGACLCLPGFVGSRCQD-VCP--AGWYGPSCQTR-----CSCANDGHCHPATGHCSCAPGWTGFSCQRACDTGHWGPDCSHPCNCSAGHGSCDAISGL-------------------CLCEAGYVGPRCEQ-QCPQG---HFGPGCEQRCQCQHGAACDHVSGACTCPAGWRGTFCE 944          
BLAST of CX301562 vs. ExPASy Swiss-Prot
Match: MEGF6_RAT (Multiple epidermal growth factor-like domains protein 6 OS=Rattus norvegicus GN=Megf6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 56/197 (28.43%), Postives = 73/197 (37.06%), Query Frame = 3
Query:   57 QSACPNG-----CNGHGSCGTNDQCTCYNRIDGE----PAWVNADCSARTCPKSAAWVGSVQNSNDAHPVVECSNKGICDRKTGECQCFPNYDGIACERTVCPNRCSDSGICFSQNQLATDAGKTYTTPWDSEKEVG-CVCDPGRRGPDCSLIECPSGPDVMGGYGNEAGRDCSGRGLCDYSSGICNCFHGYYGTKC 617
            QS+C +G     C  H +C     C   + + G     P W    C  + CP+   W G             C     C   TGEC+C P + G++CE+      C           L    G+T    W  +   G C C  G  G  C L  CPSG     G G E    C   G CD ++G C C  G+ G  C
Sbjct: 1120 QSSCVSGTFGVHCEEHCACRKGASC---HHVTGACFCPPGWRGPHCE-QACPRG--WFGEACAQRCL-----CPTNASCHHVTGECRCPPGFTGLSCEQA-----CQPGTFGKDCEHLCQCPGET----WACDPASGVCTCAAGYHGTGC-LQRCPSG---RYGPGCEHICKCLNGGTCDPATGACYCPAGFLGADC 1292          
BLAST of CX301562 vs. ExPASy Swiss-Prot
Match: TEN4_MOUSE (Teneurin-4 OS=Mus musculus GN=Odz4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 57/216 (26.39%), Postives = 78/216 (36.11%), Query Frame = 3
Query:   66 CPNGCNGHGSCGTNDQCTCYNRIDGEPAWVNADCSARTCPK---------------SAAWVGSVQNSNDAHPV-VECSNKGICDRKTGECQCFPNYDGIACERTVCPN-RCSDSGICF------SQNQLATDAGKTYTTPWDSEKEVG--------CVCDPGRRGPDCSLIECPSGPDVMGGYGNEAGRDCSGRGLCDYSSGICNCFHGYYGTKCE 620
            CP+ C G+G C  +  C C+        ++  DC   +CP                 + W G+  +      + V CS+ G C    G C C P Y G +CE   C +  CS  G+C       S     T+      T  D     G        C CDP   G DCS+  C +              DC G G+C    G C C  G+ G  C+
Sbjct:  568 CPSNCYGNGDC-ISGTCHCF------LGFLGPDCGRASCPVLCSGNGQYMKGRCLCHSGWKGAECDVPTNQCIDVACSSHGTC--IMGTCICNPGYKGESCEEVDCMDPTCSSRGVCVRGECHCSVGWGGTNCETPRATCLDQCSGHGTFLPDTGLCNCDPSWTGHDCSIEICAA--------------DCGGHGVC--VGGTCRCEDGWMGAACD 758          
The following BLAST results are available for this feature:
BLAST of CX301562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TEN3_DANRE1.060e-1128.42Teneurin-3 OS=Danio rerio GN=odz3 PE=2 SV=1[more]
MEGF6_HUMAN3.084e-1129.65Multiple epidermal growth factor-like domains prot... [more]
MEGF6_RAT6.869e-1128.43Multiple epidermal growth factor-like domains prot... [more]
TEN4_MOUSE8.972e-1126.39Teneurin-4 OS=Mus musculus GN=Odz4 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC08011B04SK PhyRootSw1 Citrus sinensis cDNA clone C08011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301562 ID=CX301562; Name=CX301562; organism=Citrus sinensis; type=EST; length=728bp
TCGGCACGAGGCAGATTTTGTGTTTAGCTTTATTAGTTCTCTTTGTTGCA
GTTGTGCAGAGCGCATGCCCTAACGGCTGCAATGGACATGGTTCTTGTGG
AACTAATGACCAGTGTACTTGCTACAACAGAATTGACGGAGAGCCTGCTT
GGGTAAATGCTGATTGCTCAGCTAGAACCTGCCCAAAGTCTGCTGCCTGG
GTTGGAAGCGTTCAAAATTCAAACGATGCTCATCCAGTTGTGGAGTGTTC
CAATAAAGGTATCTGTGATCGGAAAACTGGAGAATGCCAATGCTTCCCTA
ATTACGATGGGATTGCATGCGAGCGAACTGTTTGTCCAAACAGATGCAGT
GATTCTGGTATCTGCTTCTCTCAAAATCAATTAGCGACCGATGCCGGCAA
AACTTATACCACTCCATGGGATTCTGAGAAGGAAGTGGGTTGTGTTTGTG
ATCCTGGCAGACGCGGACCTGATTGCTCACTCATCGAATGTCCTTCTGGT
CCTGACGTGATGGGCGGGTACGGAAACGAAGCTGGAAGAGATTGTTCTGG
ACGTGGCCTCTGCGATTACTCCAGTGGTATCTGCAATTGCTTCCATGGCT
ACTATGGCACTAAGTGCGAGTTCCAGACAGTTCTTGGTTAAGCTGTATTA
ATCTCTTGTCCGTTCGTAATGAAGATCGTTGCGTATTATTATTGTATGTA
ATTAGTGTGATGAGTTTGCCATCTTCTA
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