CX301551

Overview
NameCX301551
Unique NameCX301551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_HUMAN (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.486e-67
Identity = 119/172 (69.19%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K + G IG KHR++K++A+ WFQQKY+GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_CHILA (60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 2.486e-67
Identity = 119/172 (69.19%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K + G IG KHR++K++A+ WFQQKY+GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_BOVIN (60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 2.486e-67
Identity = 119/172 (69.19%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K + G IG KHR++K++A+ WFQQKY+GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.240e-67
Identity = 123/171 (71.93%), Postives = 145/171 (84.80%), Query Frame = 2
Query:   38 EDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            E K +N MR+LK+ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVR+FGIRRNEKIAVH TVRG KA EIL++GLKVKEYEL K+NFS+TG FGFG+ EHIDLG+KYDP  GI+GMDFYVVL R G RV++R+  PGRIG  HRV K++ I WFQQKY+GI++
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 7.232e-67
Identity = 118/172 (68.60%), Postives = 149/172 (86.63%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +  +K + G IG KHR++K++A+ WFQQKY+GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_PIG (60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=2 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 9.446e-67
Identity = 118/172 (68.60%), Postives = 150/172 (87.21%), Query Frame = 2
Query:   35 NEDKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            ++ + +NPMR+L++ KL +N CVGESGDRLTRAAKVLEQLT + PV+SKARYTVRSFGIRRNEKIAVH TVRG KA EIL++GLKV+EYEL+K NFS+TG FGFGI EHIDLG+KYDP+ GI+G+DFYVVL RPG+ +A +K + G IG KHR++K++A+ WFQQK++GI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.688e-66
Identity = 117/170 (68.82%), Postives = 145/170 (85.29%), Query Frame = 2
Query:   41 DKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            +K +NPM++L++ KL++N  +GESGDRLTRAAKVLEQL+ + PV+SKARYT+R FGIRRNEKIA HVTVRG KA EIL+RGLKVKEYELKK+NFS TG FGFGI EHIDLG+KYDP+ GI+GMDFYVV+ RPG RVARRK + GR+G  H++  +D I WF+QKY+ +V+
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11B_YEAST (60S ribosomal protein L11-B OS=Saccharomyces cerevisiae GN=RPL11B PE=1 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.364e-65
Identity = 119/169 (70.41%), Postives = 143/169 (84.62%), Query Frame = 2
Query:   44 KLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            K +NPMR LK++KL++N  VGESGDRLTRA+KVLEQL+ + PV SKARYTVR+FGIRRNEKIAVHVTVRG KA EIL+RGLKVKEY+L+ +NFS TG FGFGI EHIDLG+KYDP+ GIFGMDFYVV+ RPG RV RRK   G +GN H+ TK+D ++WF+QKY+  V+
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVL 172          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11A_YEAST (60S ribosomal protein L11-A OS=Saccharomyces cerevisiae GN=RPL11A PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.364e-65
Identity = 119/169 (70.41%), Postives = 143/169 (84.62%), Query Frame = 2
Query:   44 KLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIVM 550
            K +NPMR LK++KL++N  VGESGDRLTRA+KVLEQL+ + PV SKARYTVR+FGIRRNEKIAVHVTVRG KA EIL+RGLKVKEY+L+ +NFS TG FGFGI EHIDLG+KYDP+ GIFGMDFYVV+ RPG RV RRK   G +GN H+ TK+D ++WF+QKY+  V+
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVL 172          
BLAST of CX301551 vs. ExPASy Swiss-Prot
Match: RL11_TETTH (60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.841e-65
Identity = 115/169 (68.05%), Postives = 145/169 (85.80%), Query Frame = 2
Query:   41 DKLKNPMRQLKVDKLIINCCVGESGDRLTRAAKVLEQLTDKKPVYSKARYTVRSFGIRRNEKIAVHVTVRGFKANEILDRGLKVKEYELKKKNFSNTGCFGFGITEHIDLGLKYDPATGIFGMDFYVVLIRPGYRVARRKIKPGRIGNKHRVTKDDAIAWFQQKYEGIV 547
            DK +N MR++K+ KL+INCCVGESGD+LT+AAKVL+ L+ ++PV+S+ARYT+RSFGI+RNEK+AVHVT+RG KA +IL RGLKVKE EL+KKNFSNTG FGFGI EHIDLG+KYDP+TGIFGMDFYVVL RPG RVARR+    R+GN   ++K++ I WF+ ++EG V
Sbjct:    3 DKKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFKTEFEGNV 171          
The following BLAST results are available for this feature:
BLAST of CX301551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RL11_HUMAN2.486e-6769.1960S ribosomal protein L11 OS=Homo sapiens GN=RPL11... [more]
RL11_CHILA2.486e-6769.1960S ribosomal protein L11 OS=Chinchilla lanigera G... [more]
RL11_BOVIN2.486e-6769.1960S ribosomal protein L11 OS=Bos taurus GN=RPL11 P... [more]
RL11_CAEEL4.240e-6771.9360S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_PONAB7.232e-6768.6060S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]
RL11_PIG9.446e-6768.6060S ribosomal protein L11 OS=Sus scrofa GN=RPL11 P... [more]
RL11_SCHPO4.688e-6668.8260S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11B_YEAST1.364e-6570.4160S ribosomal protein L11-B OS=Saccharomyces cerev... [more]
RL11A_YEAST1.364e-6570.4160S ribosomal protein L11-A OS=Saccharomyces cerev... [more]
RL11_TETTH8.841e-6568.0560S ribosomal protein L11 OS=Tetrahymena thermophi... [more]

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Properties
Property NameValue
Genbank descriptionC08011A04SK PhyRootSw1 Citrus sinensis cDNA clone C08011A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301551 ID=CX301551; Name=CX301551; organism=Citrus sinensis; type=EST; length=651bp
CGAATTCGGCACGAGGAACTCATTAAACATGTCAAACGAAGATAAACTGA
AGAACCCTATGCGCCAGTTAAAGGTTGATAAGTTGATTATCAACTGCTGC
GTCGGAGAGTCTGGTGATAGATTGACCCGTGCAGCTAAGGTTTTAGAACA
ATTAACCGATAAGAAGCCAGTGTATTCCAAGGCAAGATACACTGTTCGAT
CCTTCGGCATCAGAAGAAACGAGAAGATCGCCGTTCACGTCACTGTCCGA
GGTTTCAAGGCCAATGAAATCTTAGATCGTGGTTTAAAGGTCAAGGAATA
CGAGTTAAAGAAGAAGAACTTCTCCAACACTGGTTGCTTTGGCTTCGGTA
TCACCGAGCACATCGATTTAGGTCTTAAGTACGACCCTGCCACCGGTATT
TTCGGTATGGATTTCTATGTTGTCTTAATTCGCCCTGGATACCGAGTCGC
TAGAAGAAAGATCAAGCCCGGAAGAATCGGCAATAAGCACAGAGTCACCA
AGGATGATGCTATTGCTTGGTTCCAACAGAAATACGAAGGCATTGTTATG
TAAAATAGGGAACTCTTCAGTTATAAATCTTAACATGTAATCATCATGGC
GAACCCATCATANATACACTACAACACTCTGATGGTAAATTAAGAACATA
T
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