EG358262

Overview
NameEG358262
Unique NameEG358262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length244
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.331e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   35 MLTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            M++V E+RKAQ AEGPATI+AIGTA P NCV+QSTYPD+YFRITNSEH T+LK+KF+RMCDKSMI +RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYM 70          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.331e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   35 MLTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            M++V E+RKAQ AEGPATI+AIGTA P NCV+QSTYPD+YFRITNSEH T+LK+KF+RMCDKSMI +RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYM 70          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 2
Query:   35 MLTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            M  ++  RKAQ A+GPATI+AIGTATPPN VDQSTYPDYYF+ITNSEH+T+LKEKF+RMCDKS IKKRYM
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSGIKKRYM 75          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   35 MLTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            M++V E+R+AQ AEGPATIMAIGTA P NCV+QSTYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   35 MLTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            M++V E+R AQ AEGPATI+AIGTA P NCV+QSTYPD+YF+ITNSEH T+LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 2
Query:   35 MLTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            M++V E+R+AQ AEGPATIMAIGTA P NCV+QSTYPD+YF+ITNSEH  +LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPSNCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.421e-27
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 2
Query:   38 LTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            +TV+EVRKAQ A GPAT++AIGTATP NCV Q+ YPDYYFRIT SEH+T+LKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYM 74          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.421e-27
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 2
Query:   38 LTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            +TV+EVRKAQ A GPAT++AIGTATP NCV Q+ YPDYYFRIT SEH+T+LKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYM 74          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.421e-27
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 2
Query:   38 LTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            +TV+EVRKAQ A GPAT++AIGTATP NCV Q+ YPDYYFRIT SEH+T+LKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYM 74          
BLAST of EG358262 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.421e-27
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 2
Query:   38 LTVDEVRKAQGAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHLTDLKEKFKRMCDKSMIKKRYM 244
            +TV+E+RKAQ A+GPAT++AIGTATP N V Q+ YPDYYFRIT SEH+TDLKEKFKRMCDKSMI+KRYM
Sbjct:    4 VTVEEIRKAQRADGPATVLAIGTATPANYVTQADYPDYYFRITKSEHMTDLKEKFKRMCDKSMIRKRYM 72          
The following BLAST results are available for this feature:
BLAST of EG358262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS5_PEA3.331e-2777.14Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS3_PEA3.331e-2777.14Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHSY_PINST4.351e-2778.57Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHS9_MEDSA4.351e-2777.14Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]
CHS8_MEDSA4.351e-2777.14Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS3_MEDSA4.351e-2777.14Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHS6_SORBI7.421e-2778.26Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI7.421e-2778.26Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS4_SORBI7.421e-2778.26Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS3_RUTGR7.421e-2778.26Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank description12d2 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d2, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358262 ID=EG358262; Name=EG358262; organism=Citrus sinensis; type=EST; length=244bp
ACCCGGGGAACCGTTGGATTGGAAGCAACAAACAATGTTGACCGTCGATG
AAGTTCGGAAGGCTCAAGGTGCCGAAGGTCCGGCCACGATCATGGCCATT
GGAACGGCAACCCCTCCGAATTGTGTTGATCAAAGCACGTATCCGGATTA
TTATTTTCGCATCACAAATAGTGAACACTTGACTGATCTTAAAGAGAAAT
TCAAGCGCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
back to top