EG358256

Overview
NameEG358256
Unique NameEG358256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.059e-28
Identity = 56/70 (80.00%), Postives = 66/70 (94.29%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M++V E+RKAQRAEGPATI+AIGTA P NCV+QSTYPD+YF+ITNSEH T+LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.383e-28
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M++V E+RKAQRAEGPAT++AIGTATP NCV Q+ YPDYYFRITNSEHMT+LKEKFKRMC+KSMI KRYM
Sbjct:    1 MVSVAEIRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITNSEHMTELKEKFKRMCEKSMINKRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.383e-28
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M+TV E+RKAQRAEGPATI+AIGTA P NCV+QSTYPD+YF+ITNSEH T LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVTVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.806e-28
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   82 LTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVRKAQRA GPAT++AIGTATP NCV Q+ YPDYYFRIT SEHMTDLKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTDLKEKFKRMCDKSQIRKRYM 74          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.806e-28
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   82 LTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVRKAQRA GPAT++AIGTATP NCV Q+ YPDYYFRIT SEHMTDLKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTDLKEKFKRMCDKSQIRKRYM 74          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.806e-28
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1
Query:   82 LTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVRKAQRA GPAT++AIGTATP NCV Q+ YPDYYFRIT SEH+TDLKEKFKRMCDKSMI+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSEHLTDLKEKFKRMCDKSMIRKRYM 74          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.359e-28
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M +V+E+RKAQRA GPAT++AIGTATP NC+ Q+ YPDYYFRIT S+HMT+LKEKFKRMCDKSMIKKRYM
Sbjct:    1 MASVEEIRKAQRAHGPATVLAIGTATPSNCITQADYPDYYFRITKSDHMTELKEKFKRMCDKSMIKKRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS7_PICMA (Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.359e-28
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M  ++  RKAQRA+GPATI+AIGTATPPN VDQSTYPDYYF+ITNSEHMT+LKEKF+RMCDKS IKKRYM
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFQRMCDKSAIKKRYM 75          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.081e-28
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M  ++  RKAQRA+GPATI+AIGTATPPN VDQSTYPDYYF+ITNSEHMT+LKEKF+RMCDKS IKKRYM
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSGIKKRYM 75          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.081e-28
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M+TV+EVRKAQRAEGPATI+AIGTATPPN VDQSTYPD+YFR+TNSEH  +LK KF+RMCD S IKKRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYM 70          
The following BLAST results are available for this feature:
BLAST of EG358256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS2_MEDSA1.059e-2880.00Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHSY_VITVI1.383e-2881.43Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHS2_PEA1.383e-2881.43Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHS7_SORBI1.806e-2882.61Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS3_SORBI1.806e-2882.61Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHS2_MAIZE1.806e-2882.61Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHSY_BETVE2.359e-2878.57Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS7_PICMA2.359e-2881.43Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 ... [more]
CHSY_PINST3.081e-2881.43Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHSY_HYDMC3.081e-2881.43Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]

Pages

back to top
Properties
Property NameValue
Genbank description1e8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0001e8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358256 ID=EG358256; Name=EG358256; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAATTTATAAAGTATCAACAAGAGCTAGACAGGTCTCCG
GGAACCGTTGGATTGGAAGCAACAAACAATGTTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCGAAGGTCCGGCCACGATCATGGCCATTGGAACG
GCAACCCCTCCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACGAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
back to top