EG358256

Overview
NameEG358256
Unique NameEG358256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.529e-27
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M++V E+RK QRAEGPATI+AIGTA P NCV+QSTYPD+YF+ITNSEH T LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRKPQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.997e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M++V E+RKAQRAEGPATI+AIGTA P NCV+QSTYPD+YFRITNSEH  +LK+KF+RMCDKSMI +RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKIELKQKFQRMCDKSMINRRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.406e-27
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++ V+ +RKAQRAEGPATI+AIGTATP NCV Q+ YPDYYFR+T SEHM DLKEKF+RMCDKSMI+KRYM
Sbjct:    7 VIDVETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYM 76          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.406e-27
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M TV E+R AQRA+GPAT++AIGTATP + V+Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMIKKRYM
Sbjct:    1 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.406e-27
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1
Query:   82 LTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+EVR AQRAEGPAT++AIGTATP NCV Q+ YPDYYF+IT S+HM DLKEKFKRMCDKS I+KRYM
Sbjct:    5 MTVEEVRNAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYM 73          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHSY_DIACA (Chalcone synthase OS=Dianthus caryophyllus GN=CHS PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.811e-27
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M +++E+R+A RA+GPATI+AIGTATPPN + Q+ YPDYYFR+T SEHMT+LKEKF+RMCDKSMIKKRYM
Sbjct:    1 MASIEEIRQAPRADGPATILAIGTATPPNAIYQADYPDYYFRVTKSEHMTELKEKFRRMCDKSMIKKRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.811e-27
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M+TV+E RKAQRAEGPAT++AIGTATPPNCVDQS Y DYYFRITNSE   +LKEKF+RMC+KSMI  RYM
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.811e-27
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1
Query:   82 LTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            +TV+E+RKAQRA+GPA ++AIGTATP N V Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMI+KRYM
Sbjct:    4 VTVEEIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYM 72          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.811e-27
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query:   79 MLTVDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            M+TV+E RKAQRAEGPAT++AIGTATPPNCVDQS Y DYYFRITNSE   +LKEKF+RMC+KSMI  RYM
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYM 70          
BLAST of EG358256 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.589e-27
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 1
Query:   88 VDEVRKAQRAEGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYM 288
            ++E+R AQRAEGPATI+AIGTATP NCV Q+ YPD+YFRITNSEH T+LKEKF+RMCDKSMIKKRYM
Sbjct:    7 MEEIRNAQRAEGPATILAIGTATPANCVIQADYPDFYFRITNSEHKTELKEKFQRMCDKSMIKKRYM 73          
The following BLAST results are available for this feature:
BLAST of EG358256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS1_PEA1.529e-2778.57Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]
CHS4_PEA1.997e-2777.14Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]
CHS3_GERHY3.406e-2777.14Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS2_CITSI3.406e-2778.57Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS1_HORVU3.406e-2778.26Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHSY_DIACA5.811e-2774.29Chalcone synthase OS=Dianthus caryophyllus GN=CHS ... [more]
CHS9_DAUCA5.811e-2778.57Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS2_RUTGR5.811e-2778.26Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS1_DAUCA5.811e-2778.57Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHSY_CHRAE7.589e-2780.60Chalcone synthase OS=Chrysosplenium americanum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank description1e8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0001e8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358256 ID=EG358256; Name=EG358256; organism=Citrus sinensis; type=EST; length=288bp
ACGCGGGATACAAATTTATAAAGTATCAACAAGAGCTAGACAGGTCTCCG
GGAACCGTTGGATTGGAAGCAACAAACAATGTTGACCGTCGATGAAGTTC
GCAAGGCTCAACGTGCCGAAGGTCCGGCCACGATCATGGCCATTGGAACG
GCAACCCCTCCGAATTGTGTTGATCAAAGCACGTATCCGGATTATTATTT
TCGCATCACGAATAGTGAACACATGACTGATCTTAAAGAGAAATTCAAGC
GCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
back to top