EG358253 | Citrus Genome Database

Overview


Name	EG358253
Unique Name	EG358253
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	292

Libraries


Library Name	Type
Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VP+LGKEAA  AIKEWGQPKSKITH+VFCTTSGVDMPGADY+LTKLLGLRPSVKRLMM
Sbjct:  101 EVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VP+LGK AA KAIKEWGQPKSKITHLVFCTTSGVDMPGADY+LTK+LGLRPSVKRLMM
Sbjct:  105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMM 163

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VP+LGKEAA  AIKEWGQPKSKITH+VFCTTSGVDMPGADY+LTKLLGLRPSVKRLMM
Sbjct:  101 EVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMM 159

[Close]

BLAST of EG358253 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.150e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -1

Query:    2 QVPRLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMM 178
            +VPRLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADY+LTKLLGLRP VKR MM
Sbjct:  101 EVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMM 159

The following BLAST results are available for this feature:

BLAST of EG358253 vs. ExPASy Swiss-Prot

BLAST of EG358253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142


Match Name	E-value	Identity	Description
CHS6_TRISU	4.150e-25	89.83	Chalcone synthase 6 OS=Trifolium subterraneum GN=C...	[more]
CHS6_PEA	4.150e-25	89.83	Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ...	[more]
CHS6_IPOBA	4.150e-25	89.83	Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI...	[more]
CHS5_TRISU	4.150e-25	89.83	Chalcone synthase 5 OS=Trifolium subterraneum GN=C...	[more]
CHS5_PEA	4.150e-25	89.83	Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ...	[more]
CHS4_TRISU	4.150e-25	89.83	Chalcone synthase 4 (Fragment) OS=Trifolium subter...	[more]
CHS4_SORBI	4.150e-25	89.83	Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=...	[more]
CHS4_PEA	4.150e-25	89.83	Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ...	[more]
CHS4_IPOBA	4.150e-25	89.83	Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF...	[more]
CHS3_TRISU	4.150e-25	89.83	Chalcone synthase 3 OS=Trifolium subterraneum GN=C...	[more]

Pages

Properties


Property Name	Value
Genbank description	9b1 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0009b1, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EG358253 ID=EG358253; Name=EG358253; organism=Citrus sinensis; type=EST; length=292bp
ACATCATGAGACGTTTGACGGATGGGCGAAGGCCCAAGAGTTTTGTGAGC
CGGTAATCGGCCCCGGGCATGTCAACACCGCTAGTGGTGCAAAAGACCAA
GTGGGTGATTTTGGACTTGGGCTGGCCCCATTCTTTAATGGCCTTGGTGG
CTGCTTCTTTGCCGAGCCTCGGTACCTGCCCGGGCGGCCGCTCGATGCAC
GTGGTTATGTTGCAGCCCTGTCTCTTGGTGCTCAAGGCATCTGCTTAGGC
ACAAGGTTTGTGGCAAGTGAGGAAAGCTATGCGCATCCTGAG