GR312980

Overview
NameGR312980
Unique NameGR312980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV ++T++D  + P+GW  WSGDFAL TLYYAEY NTGPGS T NRV W GYHV+ + +  S FTV NF+ G  W+  T VPF  GL
Sbjct:  471 SRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINA-TDASNFTVTNFLVGEGWIGQTGVPFVGGL 558          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++++  +I+PAGW+EW  DFAL TL+Y EY N GPGS T+ RVKW GYHV+TSP    QFTV   I G SWL +T V +T+GL
Sbjct:  455 SRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.663e-26
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV+I+  +  ++ P GW+EW+ DFALDTL+Y E+MN GPGS  ++RVKW GYHV  +  Q + FTV  FI GN WLP+T V F+ GL
Sbjct:  435 SRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 523          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.663e-26
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +K+F+D L++PAGW++W  DFAL+TLYY EYMN GPGS+  NRV+W G+  + +  + SQF+VG FI GN WL +T +PFT  L
Sbjct:  430 SRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.837e-26
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SR VY+ + +   I+P GW+EW+G FALD+LYY EYMN G GS    RVKW GYHV+TS  + S+FTV  FI+G+SWLP+T V F SGL
Sbjct:  497 SRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.318e-26
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++ + ++INPAGW  W G+FALDTLYY EY NTG G++T+ RV W+G+ V+TS ++   FT G+FIAG SWL AT  PF+ GL
Sbjct:  231 SRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.318e-26
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTVY+ T++  L+ P GW+EW G+FALDTL+Y EY N GPG  ++ RVKW GYH++   + +S FTVG+FI G  WLPAT V FT+GL
Sbjct:  454 SRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRSSGRVKWPGYHIMDKRTALS-FTVGSFIDGRRWLPATGVTFTAGL 541          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.078e-25
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV++K  L +L++PAGW+ WSG FAL TLYY EY NTG G+S + RVKW GYHV+ + ++  +FTV NF+ GN W+ AT VP   GL
Sbjct:  466 SRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTVENFLDGNYWITATGVPVNDGL 554          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.407e-25
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWS--GDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +KT++DS+++P GW  W+    + LDTL+YAEY N GP SST  RV+W+G+HVL+  S  S F+VG FIAG +WLP + +PFTS L
Sbjct:  450 SRTVVLKTYIDSVVSPVGWSPWTKGSTYGLDTLFYAEYKNIGPASSTRWRVRWKGFHVLSKASDASAFSVGKFIAGTAWLPGSGIPFTSEL 540          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.407e-25
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 263
            S TV +K+F+D  INP GW+ W+GD A DT++YAEY+N+GPG+ST NRVKW+G     +  + ++FTV  FI GN+WLPAT VPF S
Sbjct:  476 STTVIMKSFMDKFINPKGWLPWTGDTAPDTIFYAEYLNSGPGASTKNRVKWQGLKTSLTKKEANKFTVKPFIDGNNWLPATKVPFNS 562          
The following BLAST results are available for this feature:
BLAST of GR312980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME20_ARATH1.273e-2658.43Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME1_FICAW1.273e-2657.30Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME44_ARATH1.663e-2655.06Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME40_ARATH1.663e-2656.18Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME61_ARATH4.837e-2658.43Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_DAUCA6.318e-2656.18Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME22_ARATH6.318e-2657.30Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME6_ARATH1.078e-2556.18Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME60_ARATH1.407e-2554.95Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME46_ARATH1.407e-2556.32Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC06057A03 RindPdigS Citrus sinensis cDNA clone N04A12, mRNA sequence.