GR312980

Overview
NameGR312980
Unique NameGR312980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S    +++F+  L++PAGW  W G+  L TL+Y EY N GPG+ T+ RVKW G+ V+  P Q ++FTV   + G +WL  T +P+ SGL
Sbjct:  436 STVAVMQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKETRIPYESGL 524          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.780e-20
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRT+ + TF+   + P GW  W GDF L TL+Y+E  NTGPGS+ ANRV W G   L S   + +FT   +I G+ W+P   VP+T+GL
Sbjct:  478 SRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPGSALANRVTWAGIKTL-SEEDILKFTPAQYIQGDDWIPGKGVPYTTGL 565          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.037e-20
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S    +++F+  L++PAGW  W G+  L TL+Y EY N GPG+ T+ RVKW G+ V+  P Q ++FTV   + G +WL  + +P+ SGL
Sbjct:  436 STVAVLQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKESRIPYKSGL 524          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.836e-20
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S    +++F+  L++PAGW  W G+  L TL+Y EY N GPG+ T+ RVKW G+ V+  P + ++FTV   + G +WL  + +P+ SGL
Sbjct:  409 STVAVLQSFIGDLVDPAGWTPWKGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFTVAKLLDGETWLKESRIPYESGL 497          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.969e-19
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++++D  I+ +GW +W+G  ALDTLYY EY N GPGS T  RV W G+H++        FT   FI G+ WL +T+ P+ +G+
Sbjct:  460 SRTVVMESYIDEFIDGSGWSKWNGGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIM-GYEDAFNFTATEFITGDGWLGSTSFPYDNGI 547          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 263
            SRT+ + T +D +I+P GW++W+  FAL+TL+Y EY N G GS    RV+WRG   + S     +F  GNF+ GN+W+P T +P+ +
Sbjct:  615 SRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRI-SDRAAREFAPGNFLRGNTWIPQTRIPYNA 700          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRT+ + TF+   + P GW  W G+F L+TL+Y+E  NTGPG++   RV W G   L S  ++ +FT   +I G++W+P   VP+  GL
Sbjct:  475 SRTIIMNTFIPDFVPPEGWQPWLGEFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKL-SDEEILKFTPAQYIQGDAWIPGKGVPYILGL 562          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPAT 245
            SRTV++   L+SLI+P GWM W+GDFAL TLYY EY NTGPGS  ++RV W           V  ++V NFI  + W   T
Sbjct:  524 SRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSSE---IPEKHVDVYSVANFIQADEWASTT 601          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSG-DFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRTV +++ ++ +I+P GW+ W   DFA+DTL YAEY N GP  +TA RVKW G+ VL +  +  +FTVG F+ G  W+ A   P   GL
Sbjct:  519 SRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFRVL-NKEEAMKFTVGPFLQG-EWIQAIGSPVKLGL 606          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEW-SGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNV 251
            S TV ++T + +++ P+GWM W SG     ++ Y EY NTGPGS    RVKW GY  + S ++ ++FTV   + G  W+PAT V
Sbjct:  498 STTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGV 581          
The following BLAST results are available for this feature:
BLAST of GR312980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME19_ARATH1.363e-2043.82Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME21_ARATH1.780e-2047.19Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME42_ARATH3.037e-2042.70Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME30_ARATH8.836e-2041.57Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME12_ARATH1.969e-1944.94Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME43_ARATH1.666e-1843.68Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME28_ARATH1.842e-1741.57Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME64_ARATH1.560e-1649.38Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME45_ARATH2.661e-1646.67Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME1_ARATH2.252e-1542.86Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]

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Properties
Property NameValue
Genbank descriptionC06057A03 RindPdigS Citrus sinensis cDNA clone N04A12, mRNA sequence.