GR312980

Overview
NameGR312980
Unique NameGR312980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSG-DFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            SRT+ +++ ++++I+P GW+ W   DFA+DTLYYAEY N G    T +RVKW G+ V+ +  +   +TVG F+ G+ W+ A+  P   GL
Sbjct:  524 SRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQGD-WISASGSPVKLGL 611          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDT-LYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S TV +++ + +L+NP GWM W  +    T ++YAEY N+GPG+  + RVKW GY    +     +FTV +FI G  WLP   V F S L
Sbjct:  492 STTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQFDSTL 581          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSW 233
            SRTV+I   L++LI P GW+ WSGDFAL TLYY E  NTGPGS  + RV W           V  ++V NFI  + W
Sbjct:  473 SRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ---IPDEHVHVYSVANFIQADEW 546          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWS-GDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGN-SWLPATNVPFTSGL 269
            SRT+ +++++D  I P GW  W+  +F  DT YYAEY N GPG++   R+ W+G+    +     +FT G +I  + +WL   NVP+ +G+
Sbjct:  281 SRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAGM 371          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.252e-14
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALD--TLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAG-NSWLP 239
            S+TV +++ + S +NPAGW+ W+  +     T++Y EY N+GPGS  + RVKW GY  ++S  + ++FTV  F+ G ++W+P
Sbjct:  878 SKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWIP 959          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 3
Query:    9 TVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            T  I T +  LI P GW EW G+    T  Y E+ N GPG++TA RV W    +  S ++V +FTV N++   +W+   NVP   GL
Sbjct:  500 TAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S TV I + +  +I P GW  W G+    +  Y EY N GPG+ T  RV W    +  S ++V+ FTV N++   +W+   NVP T GL
Sbjct:  509 STTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 3
Query:    9 TVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            TV I T +  LI P GW EW G+    T  Y E+ N GPG++T  R  W    V  S ++V  +TV N++   +W+   NVP   GL
Sbjct:  504 TVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of GR312980 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 3
Query:    3 SRTVYIKTFLDSLINPAGWMEWSGDFALDTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 269
            S TV + T +  LI P GW  W G+    +  Y EY N GPG+    RV W    V  S ++V+ FT  N++   +W+   NVP T GL
Sbjct:  502 STTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
The following BLAST results are available for this feature:
BLAST of GR312980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PME13_ARATH2.252e-1542.22Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU2.942e-1542.22Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME51_ARATH8.559e-1549.35Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_PETIN1.907e-1437.36Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME26_ARATH3.252e-1440.24Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME_BRANA6.781e-1240.23Probable pectinesterase/pectinesterase inhibitor O... [more]
PME5_ARATH8.857e-1238.20Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME37_ARATH1.511e-1139.08Probable pectinesterase/pectinesterase inhibitor V... [more]
PME4_ARATH4.396e-1138.20Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]

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Properties
Property NameValue
Genbank descriptionC06057A03 RindPdigS Citrus sinensis cDNA clone N04A12, mRNA sequence.