GR312979

Overview
NameGR312979
Unique NameGR312979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.689e-18
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G  L AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMV
Sbjct:  170 GTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 217          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.073e-17
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G    AE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMV
Sbjct:  163 GTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMV 210          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+V
Sbjct:  176 GSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 223          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+V
Sbjct:  175 GSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 222          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+V
Sbjct:  176 GSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 223          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.391e-17
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+V
Sbjct:  177 GDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 224          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.123e-17
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEI+GTF+LVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+V
Sbjct:  179 GDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 226          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.123e-17
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+V
Sbjct:  175 GSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 222          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.123e-17
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+V
Sbjct:  175 GSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 222          
BLAST of GR312979 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.123e-17
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2
Query:   22 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 165
            G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+V
Sbjct:  175 GSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 222          
The following BLAST results are available for this feature:
BLAST of GR312979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP27_MAIZE3.689e-1891.67Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP1_ATRCA1.073e-1787.50Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP14_ARATH1.402e-1789.58Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.402e-1789.58Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_ARATH1.831e-1787.50Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP15_MAIZE2.391e-1787.50Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP2_PEA3.123e-1785.42Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_ARATH3.123e-1787.50Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA3.123e-1787.50Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH3.123e-1787.50Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionC06057A02 RindPdigS Citrus sinensis cDNA clone N03E03, mRNA sequence.