GO242683

Overview
NameGO242683
Unique NameGO242683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_NEUCR (60S ribosomal protein L30 OS=Neurospora crassa GN=rpl-30 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.282e-28
Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTI 401
            +SI  +LALV+KSGK  LGY++ L++LR+ K KLI++S N PPLRKSE+EYY+M++K  VHHY G N++LGTACGK FR S ++I+D GDSD +
Sbjct:   11 QSIGAKLALVIKSGKVVLGYRSTLKALRSGKAKLILISANTPPLRKSELEYYSMMSKTAVHHYTGTNIELGTACGKLFRCSTMAILDAGDSDIL 104          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_DICDI (60S ribosomal protein L30 OS=Dictyostelium discoideum GN=rpl30 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.187e-28
Identity = 60/97 (61.86%), Postives = 79/97 (81.44%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSL 410
            E+I ++LALVMKSGK  LGYK+ L++LR  K KLI+L++N P +R+SEIEYYAML+K  VH Y+GNNVDLGTA G+++RVS +SI D GDSD + +L
Sbjct:   12 ENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSIRRSEIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTAL 108          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_TRYBB (60S ribosomal protein L30 OS=Trypanosoma brucei brucei GN=RPL30 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.872e-28
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 395
            ++IN ++ LVMKSGKY LG +  L++LR  + KL+++S NCPP+RK+EIEYY  L+K  +HHY+GNN+DLGTACG++FR   LSI D GDSD
Sbjct:   10 DTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSD 101          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_YEAST (60S ribosomal protein L30 OS=Saccharomyces cerevisiae GN=RPL30 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSL 410
            ESIN +LALV+KSGKYTLGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +SI++ GDSD + +L
Sbjct:    8 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 104          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_YARLI (60S ribosomal protein L30 OS=Yarrowia lipolytica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTI 401
            +++N +L L +KSGKYTLGYK+ +++LR  K KL+I++ N P LRKSEIEYYAMLAK  VHH+ G N +LGT+CG+ FRV  ++I+D GDSD +
Sbjct:   11 DNVNAKLGLAIKSGKYTLGYKSTIKALRQGKAKLVIIAGNTPALRKSEIEYYAMLAKCTVHHFQGGNNELGTSCGRLFRVGAVTIMDAGDSDIL 104          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_CANGA (60S ribosomal protein L30 OS=Candida glabrata GN=RPL30 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSL 410
            ESIN +LALV+KSGK+TLGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +S++D GDSD + +L
Sbjct:    8 ESINQKLALVVKSGKFTLGYKSTIKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSVLDAGDSDILTAL 104          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_ASHGO (60S ribosomal protein L30 OS=Ashbya gossypii GN=RPL30 PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 4.125e-27
Identity = 57/97 (58.76%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSL 410
            E+IN +LALV+KSGKYTLGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++++D GDSD + +L
Sbjct:    8 ENINQKLALVIKSGKYTLGYKSTIKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTVLDAGDSDILTTL 104          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_LEIMA (60S ribosomal protein L30 OS=Leishmania major GN=RPL30 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.035e-27
Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 395
            +IN +L LVMKSGKY LG +  L +LR  + KL++++NNCPP+R++E+EYY  L+K  +HHY+GNN+DLGTACGK FR   LS+ + GDSD
Sbjct:   11 TINAKLQLVMKSGKYVLGTQQALTTLRQGRSKLVVIANNCPPIRRAEVEYYCTLSKTPIHHYSGNNLDLGTACGKPFRTCVLSVTNVGDSD 101          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30_KLULA (60S ribosomal protein L30 OS=Kluyveromyces lactis GN=RPL30 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.200e-26
Identity = 57/97 (58.76%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIKSL 410
            E+IN +LALV+KSGKY+LGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++I+D GDSD + +L
Sbjct:    8 ENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTAL 104          
BLAST of GO242683 vs. ExPASy Swiss-Prot
Match: RL30E_METTH (50S ribosomal protein L30e OS=Methanobacterium thermoautotrophicum GN=rpl30e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 37/93 (39.78%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDTIK 404
            I+  + + + +G   LG K  ++SL+  KGKL+++++N P   K +IEYYA L+++ V+ + G +V+LG+ CGK F V  L I DPGDS  ++
Sbjct:    3 IDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILE 95          
The following BLAST results are available for this feature:
BLAST of GO242683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RL30_NEUCR1.282e-2859.5760S ribosomal protein L30 OS=Neurospora crassa GN=... [more]
RL30_DICDI2.187e-2861.8660S ribosomal protein L30 OS=Dictyostelium discoid... [more]
RL30_TRYBB4.872e-2858.7060S ribosomal protein L30 OS=Trypanosoma brucei br... [more]
RL30_YEAST2.418e-2760.8260S ribosomal protein L30 OS=Saccharomyces cerevis... [more]
RL30_YARLI2.418e-2757.4560S ribosomal protein L30 OS=Yarrowia lipolytica G... [more]
RL30_CANGA2.418e-2759.7960S ribosomal protein L30 OS=Candida glabrata GN=R... [more]
RL30_ASHGO4.125e-2758.7660S ribosomal protein L30 OS=Ashbya gossypii GN=RP... [more]
RL30_LEIMA7.035e-2757.1460S ribosomal protein L30 OS=Leishmania major GN=R... [more]
RL30_KLULA1.200e-2658.7660S ribosomal protein L30 OS=Kluyveromyces lactis ... [more]
RL30E_METTH6.178e-1539.7850S ribosomal protein L30e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank description1331 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1522 5, mRNA sequence.