GO242679

Overview
NameGO242679
Unique NameGO242679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.476e-36
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 367
            FD RGDVKVI+ATN+IE+LDPAL+RPGRIDRKI F  PD+ T+++I  IHTS+M L++DVNLE  V TKD+ SGADI+A+CTEAGLLALRERRM+VT  DF            E   EGLY+
Sbjct:  316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.749e-35
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLY 364
            FD+R D+KVI+ATN+IE+LDPAL+RPGRIDRKIEF +PD  T+++IF IHTSRMTL + VN+E  + +K++ SGADIKAICTEAG++ALRERR  VT  DF            + V  GLY
Sbjct:  303 FDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDFISAREKVFFSKQKMVSAGLY 423          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.881e-32
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 2
Query:    8 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEG 358
            S+ D+KVI+ATNRI  LDPAL+RPGRIDRKI F  PD  T+R+IF IHTS+M L +DVNLEE +  KD+ SGA+IKAI +EAGLLALRERRM+V   DF            EG P G
Sbjct:  328 SQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAG 444          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.133e-28
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD RGDVKVI ATNRI+ LDPA+LRPGR DR IE PLP  + R +IF+IHT +M LA+DV+ +E     +  SGADIKAICTEAG+ A+RE R KVT  DF
Sbjct:  275 FDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDF 375          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 59/101 (58.42%), Postives = 78/101 (77.23%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  299 FDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   T++M L+++V+LEEFV   D  SGADI AIC EAG+ A+RE R  V   DF
Sbjct:  296 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDF 396          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 59/101 (58.42%), Postives = 78/101 (77.23%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  299 FDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 59/101 (58.42%), Postives = 78/101 (77.23%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  299 FDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 59/101 (58.42%), Postives = 78/101 (77.23%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC E+G+LA+RE R  V   DF
Sbjct:  299 FDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 58/101 (57.43%), Postives = 80/101 (79.21%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IFQ+ TS+M L+D+V+LE++V   D+ SGA+I++IC EAG+ A+R+ R  +   DF
Sbjct:  284 FDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDF 384          
The following BLAST results are available for this feature:
BLAST of GO242679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
PRS4_YEAST1.476e-3663.1126S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_ENCCU4.749e-3559.5026S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_SCHPO2.881e-3260.6826S protease regulatory subunit 4 homolog OS=Schiz... [more]
PSMR_ARCFU1.133e-2863.37Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS6B_RAT2.791e-2758.4226S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MANSE2.791e-2760.4026S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_MACFA2.791e-2758.4226S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN2.791e-2758.4226S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN2.791e-2758.4226S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_DICDI4.760e-2757.4326S protease regulatory subunit 6B homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank description1327 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1518 5, mRNA sequence.