GO242679

Overview
NameGO242679
Unique NameGO242679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 2
Query:   38 TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL-RERRMKVTHTD 301
            TNR+E LDPA +R GR    I+  LPD + R +IFQIHT ++     L+DDV++ +  +  +EFSGADI+ +   A + +L R  ++ V + D
Sbjct:  724 TNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDD 816          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 2
Query:    5 DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 265
            +S  ++ VI  TNR + +D ALLRPGR++  +E  LPD   R +IF+IHT++M     L  DVNL  +  T   +SGA+I+ +   A   A
Sbjct:  366 ESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYA 456          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 2
Query:   20 VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH--TSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            V V+ +TNR + LD AL+RPGR+DR +   LP ++ RR IF+ H  + ++T +     +        FSGADI  IC EA L A RE    V   +F
Sbjct:  449 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 545          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    5 DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 298
            D   ++ VI  TNR + +D ALLRPGR++  +E  LPD   R +I +IHTSRM     L +DV++EE       FSGA+I  +   A   A   R +KV  T
Sbjct:  413 DQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAF-YRHIKVGTT 513          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 2
Query:    5 DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL-------------RERRMKVTHTDF 304
            ++  +V +I  TNR + LD ALLRPGR++ ++E  LPD   R +I QIHT++M     L  D+NL+E       +SGA+++ +   A   AL              E  +K+T  DF
Sbjct:  359 EALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQLSMDDLTKPVEEENIKITMEDF 475          
The following BLAST results are available for this feature:
BLAST of GO242679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
YR476_MIMIV6.246e-1140.86Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
NSF_DICDI6.246e-1140.66Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
SPG7_HUMAN8.157e-1140.21Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SEC18_SCHPO8.157e-1141.18Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
NSF_ARATH8.157e-1135.04Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]

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Properties
Property NameValue
Genbank description1327 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1518 5, mRNA sequence.