GO242679

Overview
NameGO242679
Unique NameGO242679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F++  ++K+I+ATNR++ LDPALLRPGRIDRKIEFP P +  R  I +IH+ +M L   +NL +     +  SGAD+K +CTEAG+ ALRERR+ VT  DF
Sbjct:  282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDF 382          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F     VKVI ATNR++ LDPALLR GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE     D+F+GA  KA+C EAG++ALR    ++TH D+
Sbjct:  320 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDY 420          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F     VKVI ATNR++ LDPALLR GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE     D+F+GA  KA+C EAG++ALR    ++TH D+
Sbjct:  320 FQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDY 420          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F+SRG+V ++ ATNR + LDPALLRPGR DR IE PLP+   RR I +IHTS M LA++V++E      D  SGAD+KAICTEAG+ A+R+ R +VT  DF
Sbjct:  285 FESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADF 385          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF   TS+M L+++V+LE++V   D+ SGADI +IC   G+LA+RE    V   DF
Sbjct:  299 FDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDF 399          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F S   +KVI ATNR + LDPAL+R GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE   + D+F+GA +KA+C EAG+LALR    +VTH DF
Sbjct:  304 FSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDF 404          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F S   +KVI ATNR + LDPAL+R GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE   + D+F+GA +KA+C EAG+LALR    +VTH DF
Sbjct:  310 FSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDF 410          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F S  ++KVI ATNRI+ LDPALLR GR+DRKIEFPLP+ + R  I QIH+ +M ++ DVN +E   + ++F+GA +KA+C EAG++ALR    ++ H DF
Sbjct:  302 FSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDF 402          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.531e-25
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            F     VKVI ATNR++ LDPALLR GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE     D+F+GA  KA+C EAG++ALR    ++TH D+
Sbjct:  285 FQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDY 385          
BLAST of GO242679 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 2
Query:    2 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 304
            FD   +VKVI+ATNR +++DPALLRPGR+DRKIEFPLPD + +R +F   TS+M+L D V++E  V   ++ S ADI +IC EAG+LA+R  R  VT  DF
Sbjct:  268 FDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDF 368          
The following BLAST results are available for this feature:
BLAST of GO242679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
PRS8_YEAST1.172e-2553.4726S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS6A_RAT1.172e-2553.4726S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN1.172e-2553.4726S protease regulatory subunit 6A OS=Homo sapiens... [more]
PSMR_METTH1.531e-2557.43Proteasome-activating nucleotidase OS=Methanobacte... [more]
PRS6B_MOUSE1.531e-2556.4426S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6A_SOLLC1.531e-2555.4526S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ1.531e-2555.4526S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_DICDI1.531e-2552.4826S protease regulatory subunit 6A homolog OS=Dict... [more]
PR6AB_XENLA1.531e-2553.4726S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS6B_ENCCU2.000e-2555.4526S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank description1327 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1518 5, mRNA sequence.