GO242267

Overview
NameGO242267
Unique NameGO242267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 48/129 (37.21%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            +  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   +EG+A   I  K IPLSG NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   81 DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 209          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA-TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            + SGPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   ++G+A T  +   IPL+G NSV+GR  VVH             S  + + G  +A G IGL+
Sbjct:   86 DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLT 214          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 51/129 (39.53%), Postives = 66/129 (51.16%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPA----GAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            E +GPTTVK  L+GL PG H   +H +G+ +N  +STG  F P     GA        G L NI   S+G+A   I    IPLSG +SVIGR LVVH             S  + + G  +A G +GL+
Sbjct:   11 EDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 139          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            E  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P G             G L NI   ++G+A   I    IPL+G N+V+GR  VVH             S  + + G  +A G +GL+
Sbjct:   90 EEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLT 218          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 2
Query:   11 GPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP-----AGAD------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 286
            GP T+KGS++GL PG H   +H +G+ +N  IS GP + P      G D      G L N+     G+A FEI  + + LSG  S+IGR LVVH     D G G
Sbjct:   25 GPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEK-EDDLGKG 127          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 50/129 (38.76%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            E   PTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   + G+A   I    IPL+G NSVIGR LVVH             S  + + G  +A G +GL+
Sbjct:   72 ENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 45/108 (41.67%), Postives = 56/108 (51.85%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDGV 289
            EGS PTT+ G + GL PG H   +H YG+ +N  IS GP F P               G L NI   ++G A  +I  K + L G NS+IGR LVVH+    D G GV
Sbjct:   25 EGS-PTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHAD-QDDLGKGV 130          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            E  GPTTV   ++GL PG H   +H YG+ +N  ISTG  F P     GA        G L NI    +G+A   I    IPLSG+NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   86 EDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 214          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP------AGAD-----GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 313
            +  GPTTV   ++GL PG H   +H YG+ +N  +STG  F P      A  D     G L NI   ++G+A   +    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   87 DDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 215          
BLAST of GO242267 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 2
Query:    2 EGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHS 259
            + +G T VKG ++GL PG H   IH  G+ +N   STGP F P   D           G L N+   ++G+A   +  T IPLSG +S++GR +VVH+
Sbjct:   25 DSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHA 122          
The following BLAST results are available for this feature:
BLAST of GO242267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SODCP_ORYSJ1.368e-1237.21Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_ARATH1.787e-1236.43Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_PINSY2.334e-1239.53Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_SOLCS3.048e-1235.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC_PRIGL3.981e-1241.35Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODCP_MEDSA8.869e-1238.76Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODC_BRUPA1.513e-1141.67Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODCP_ZANAE2.581e-1137.98Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_SOLLC4.402e-1135.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC2_MESCR5.749e-1138.78Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]

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Properties
Property NameValue
Genbank description915 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1066 5, mRNA sequence.