GO242092

Overview
NameGO242092
Unique NameGO242092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.754e-23
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DGCLN+I +ND+VL+AGF RKG AVG+ PGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          

HSP 2 Score: 26.9498 bits (58), Expect = 1.754e-23
Identity = 17/44 (38.64%), Postives = 23/44 (52.27%), Query Frame = 1
Query:   64 KKIPPGRGLE-DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            KK   G  L+ +PF    H +      +G+EA  P SAI+KC R
Sbjct:   28 KKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.282e-23
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DG LNYI +ND+VL+AGF RKG AVG+ PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   74 LIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          

HSP 2 Score: 26.1794 bits (56), Expect = 2.282e-23
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 1
Query:   94 DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            +PF    H +      +G+EA  P SAI+KC R
Sbjct:   39 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.515e-23
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DGCLN+I +ND+VL+AGF RKG AVG+ PGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          

HSP 2 Score: 26.1794 bits (56), Expect = 8.515e-23
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 1
Query:   94 DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            +PF    H +      +G+EA  P SAI+KC R
Sbjct:   39 NPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.108e-22
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G K+ +F P+DGCLN++ +ND+VL++GF RKG A G+ PGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:   74 LIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          

HSP 2 Score: 27.7202 bits (60), Expect = 1.108e-22
Identity = 23/55 (41.82%), Postives = 27/55 (49.09%), Query Frame = 2
Query:   65 KKSLLEGVWKT-PFVGSSIAKGIVLEA---------SVSRHIDRAPLSKNALDLT 199
            KK LL   +K+ PF GSS AKGIV+E          S  R   R  L KN   +T
Sbjct:   28 KKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVT 82          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.133e-22
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DGCLNYI +ND+VL+AGF R G AVG+ PGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:   74 LIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          

HSP 2 Score: 26.9498 bits (58), Expect = 4.133e-22
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 1
Query:   64 KKIPPGRGLE-DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            KK   G  L+ +PF    H +      IG+EA  P SAI+KC R
Sbjct:   28 KKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.377e-22
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DGCLN++ +ND+VL++GF R G AVG+ PGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   74 LIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          

HSP 2 Score: 26.9498 bits (58), Expect = 5.377e-22
Identity = 15/37 (40.54%), Postives = 19/37 (51.35%), Query Frame = 1
Query:   82 RGLEDPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            R   +PF    H +      IG+EA  P SAI+KC R
Sbjct:   35 RWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.476e-21
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEK 398
            L     KIA+F P DGCLN++ +ND+VL+AG  R+G AVG+ PGVRFKVV V G+SLLALFK KKEK
Sbjct:   75 LRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          

HSP 2 Score: 30.4166 bits (67), Expect = 7.476e-21
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2
Query:   68 KSLLEGVWKTPFVGSSIAKGIVLE 139
            K LL   W+ PF+G+S AKG+V E
Sbjct:   31 KRLLGSRWRNPFMGASHAKGLVTE 54          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.620e-20
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPRS 407
            LI  G KI +F P DGCLN+  +ND+VL+AGF RK  AVG+ PGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:   74 LIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          

HSP 2 Score: 26.5646 bits (57), Expect = 3.620e-20
Identity = 17/44 (38.64%), Postives = 23/44 (52.27%), Query Frame = 1
Query:   64 KKIPPGRGLE-DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            KK   G  L+ +PF    H +      +G+EA  P SAI+KC R
Sbjct:   28 KKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.281e-19
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKP 401
            L   G KI +F P DGCLNYI +NDKVL+AG  R G +VG+ PGVRFKVVKVS VSL+A+++  K+KP
Sbjct:   74 LKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          

HSP 2 Score: 26.1794 bits (56), Expect = 2.281e-19
Identity = 18/44 (40.91%), Postives = 22/44 (50.00%), Query Frame = 1
Query:   64 KKIPPGRGLE-DPFCWLFHCERDCS*GIGIEAY*PGSAIKKCAR 192
            KK   G  L+ +PF    H        +GIEA  P SAI+KC R
Sbjct:   28 KKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVR 71          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.631e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVRKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKP 401
            LI  G KI +F PYDG + YI  ND+V + GF +KG +VG+ PG+RFKV KV  VSL A+F  KKEKP
Sbjct:   71 LIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          

HSP 2 Score: 22.7126 bits (47), Expect = 4.631e-16
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  142 IGIEAY*PGSAIKKCAR 192
            IG+EA  P SAI+K  R
Sbjct:   52 IGVEAKQPNSAIRKAVR 68          
The following BLAST results are available for this feature:
BLAST of GO242092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS23_BOVIN1.754e-2370.0040S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_DROME2.282e-2371.4340S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_BRUMA8.515e-2367.1440S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_SCHPO1.108e-2264.2940S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS23_CIOIN4.133e-2267.1440S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_CAEEL5.377e-2262.8640S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS12_TETTH7.476e-2164.1840S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_GILMI3.620e-2061.4340S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_DICDI2.281e-1961.7640S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS23_ENCCU4.631e-1657.3540S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank description740 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 885 5, mRNA sequence.