GO242092

Overview
NameGO242092
Unique NameGO242092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  198 LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFVR-KGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPR 404
            LI  G  + +F P DG +N+I ++D+V+I G    KG ++G+ PG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   77 LIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of GO242092 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.832e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  177 QKMRSI*LINKGNKIASFKPYDGCLNYIGQNDKVLIAGFV-RKGFAVGECPGVRFKVVKVSGVSLLALFKEKKEKPR 404
            +K   I LI  G +  +F P DG +N+I ++D+V +     R G A+G+ PGVRFKV+ V+ VSL  +   +KEKPR
Sbjct:   65 RKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          

HSP 2 Score: 25.7942 bits (55), Expect = 7.832e-11
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  142 IGIEAY*PGSAIKKCAR 192
            +G+EA  P SAI+KC R
Sbjct:   53 VGVEAKQPNSAIRKCVR 69          
The following BLAST results are available for this feature:
BLAST of GO242092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RS12_PYRHO7.422e-1148.5730S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_METBU7.832e-1142.8630S ribosomal protein S12P OS=Methanococcoides bur... [more]

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Properties
Property NameValue
Genbank description740 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 885 5, mRNA sequence.