GO242090

Overview
NameGO242090
Unique NameGO242090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +P++I NP+YKG W  P IDNPE+  D ++Y       +G+++WQVK+G+++DN LI +D AYA++   E
Sbjct:  276 KPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNE 345          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +P++I NP+YKG W  P IDNPE+  D ++Y       +G+++WQVK+G+++DN LI +D AYA++   E
Sbjct:  276 KPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNE 345          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            +P++I NP YKG W  P IDNPE+  D ++Y  +    +G+++WQVK+G+++DN LI +D AYA++   E
Sbjct:  276 KPRQIDNPEYKGIWIHPEIDNPEYSPDSNIYAYENFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNE 345          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            + K+I NP YKG+W  P IDNPE+ +D +LY+   +  +G E+WQVK+GS+++N+++ D    AK   E+
Sbjct:  277 KAKKIPNPEYKGEWVHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEK 346          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICD 178
            +PK+IKNP YKGKW  P I+NPE+  D +LY+ +    +G ++WQVK+G+++DN+LI D
Sbjct:  271 KPKQIKNPAYKGKWIHPEIENPEYTPDDELYLYENWGAIGFDLWQVKSGTIFDNVLITD 329          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICD 178
            +PK+IKNP YKGKW  P I+NPE+  D +LY  +    +G ++WQVK+G+++DNI+I D
Sbjct:  271 KPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITD 329          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVL 217
            +PK+ KNP YKGKW  P I+ P++  D +LYV   I  +G ++WQVK+G+++D++++ D    AK+  E+ L
Sbjct:  274 KPKQKKNPAYKGKWIHPEIEIPDYTPDDNLYVYDDIGAIGFDLWQVKSGTIFDDVIVTDSVEEAKKFGEKTL 345          
BLAST of GO242090 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 2
Query:    2 RPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 211
            + K+I NP YKG WK   I NPE+E D  +++   I  VG ++WQVK+G+++DNI++ D  A AK   ++
Sbjct:  273 KAKKIPNPAYKGVWKPRDIPNPEYEADDKVHIFDEIAAVGFDLWQVKSGTIFDNIIVTDSLAEAKAFYDQ 342          
The following BLAST results are available for this feature:
BLAST of GO242090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CALR_MOUSE5.480e-1444.29Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_CRIGR5.480e-1444.29Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_BOVIN9.347e-1444.29Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_DICDI3.552e-1342.86Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR_CAEBR6.059e-1350.85Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_CAEEL1.350e-1250.85Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_ONCVO5.129e-1241.67Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_EUGGR1.949e-1142.86Calreticulin OS=Euglena gracilis PE=2 SV=1[more]

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Properties
Property NameValue
Genbank description738 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 883 5, mRNA sequence.