GO242044

Overview
NameGO242044
Unique NameGO242044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242044 vs. ExPASy Swiss-Prot
Match: AT2B1_PIG (Plasma membrane calcium-transporting ATPase 1 OS=Sus scrofa GN=ATP2B1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 TMIFNAFVLSQIFNEFNARK-PDEINVFTGVTKNYLFMGIIGITFVLQIIIIEFLGKFTKTVKLDWKLWLASI--GIGLFSW 249
            T++FN FVL Q+FNE NARK   E NVF G+  N +F  I+  TFV+QIII++F GK     +L  + WL SI  G+G   W
Sbjct:  973 TIVFNTFVLMQLFNEINARKIHGERNVFEGIFNNAIFCTIVLGTFVVQIIIVQFGGKPFSCSELSIEQWLWSIFLGMGTLLW 1054          
BLAST of GO242044 vs. ExPASy Swiss-Prot
Match: AT2B1_HUMAN (Plasma membrane calcium-transporting ATPase 1 OS=Homo sapiens GN=ATP2B1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 TMIFNAFVLSQIFNEFNARK-PDEINVFTGVTKNYLFMGIIGITFVLQIIIIEFLGKFTKTVKLDWKLWLASI--GIGLFSW 249
            T++FN FVL Q+FNE NARK   E NVF G+  N +F  I+  TFV+QIII++F GK     +L  + WL SI  G+G   W
Sbjct:  973 TIVFNTFVLMQLFNEINARKIHGERNVFEGIFNNAIFCTIVLGTFVVQIIIVQFGGKPFSCSELSIEQWLWSIFLGMGTLLW 1054          
BLAST of GO242044 vs. ExPASy Swiss-Prot
Match: AT2B2_RAT (Plasma membrane calcium-transporting ATPase 2 OS=Rattus norvegicus GN=Atp2b2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 TMIFNAFVLSQIFNEFNARK-PDEINVFTGVTKNYLFMGIIGITFVLQIIIIEFLGK--FTKTVKLDWKLWLASIGIGLFSW 249
            T+IFN FV+ Q+FNE NARK   E NVF G+ +N +F  I+  TF +QI+I++F GK      ++LD  +W   IG+G   W
Sbjct:  996 TIIFNTFVMMQLFNEINARKIHGERNVFDGIFRNPIFCTIVLGTFAIQIVIVQFGGKPFSCSPLQLDQWMWCIFIGLGELVW 1077          
BLAST of GO242044 vs. ExPASy Swiss-Prot
Match: AT2B2_MOUSE (Plasma membrane calcium-transporting ATPase 2 OS=Mus musculus GN=Atp2b2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 TMIFNAFVLSQIFNEFNARK-PDEINVFTGVTKNYLFMGIIGITFVLQIIIIEFLGK--FTKTVKLDWKLWLASIGIGLFSW 249
            T+IFN FV+ Q+FNE NARK   E NVF G+ +N +F  I+  TF +QI+I++F GK      ++LD  +W   IG+G   W
Sbjct:  951 TIIFNTFVMMQLFNEINARKIHGERNVFDGIFRNPIFCTIVLGTFAIQIVIVQFGGKPFSCSPLQLDQWMWCIFIGLGELVW 1032          
BLAST of GO242044 vs. ExPASy Swiss-Prot
Match: AT2B2_HUMAN (Plasma membrane calcium-transporting ATPase 2 OS=Homo sapiens GN=ATP2B2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   13 TMIFNAFVLSQIFNEFNARK-PDEINVFTGVTKNYLFMGIIGITFVLQIIIIEFLGK--FTKTVKLDWKLWLASIGIGLFSW 249
            T+IFN FV+ Q+FNE NARK   E NVF G+ +N +F  I+  TF +QI+I++F GK      ++LD  +W   IG+G   W
Sbjct:  996 TIIFNTFVMMQLFNEINARKIHGERNVFDGIFRNPIFCTIVLGTFAIQIVIVQFGGKPFSCSPLQLDQWMWCIFIGLGELVW 1077          
BLAST of GO242044 vs. ExPASy Swiss-Prot
Match: AT2B2_OREMO (Plasma membrane calcium-transporting ATPase 2 (Fragment) OS=Oreochromis mossambicus GN=atp2b2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   13 TMIFNAFVLSQIFNEFNARK-PDEINVFTGVTKNYLFMGIIGITFVLQIIIIEFLGKFTKTVKLDWKLWLASIGIGL 240
            T+IFN FV+ Q+FNE NARK   E NVF G+ +N +F  I+  TF +QI+I++F GK      LD + W+  + +GL
Sbjct:  979 TIIFNTFVMMQLFNEINARKIHGERNVFDGIFRNPIFCSIVFGTFAVQIVIVQFGGKPFSCQPLDLEKWMWCVFLGL 1055          
The following BLAST results are available for this feature:
BLAST of GO242044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AT2B1_PIG2.899e-1148.78Plasma membrane calcium-transporting ATPase 1 OS=S... [more]
AT2B1_HUMAN2.899e-1148.78Plasma membrane calcium-transporting ATPase 1 OS=H... [more]
AT2B2_RAT3.787e-1145.12Plasma membrane calcium-transporting ATPase 2 OS=R... [more]
AT2B2_MOUSE3.787e-1145.12Plasma membrane calcium-transporting ATPase 2 OS=M... [more]
AT2B2_HUMAN3.787e-1145.12Plasma membrane calcium-transporting ATPase 2 OS=H... [more]
AT2B2_OREMO8.435e-1145.45Plasma membrane calcium-transporting ATPase 2 (Fra... [more]

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Properties
Property NameValue
Genbank description692 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 835 5, mRNA sequence.