GO242043

Overview
NameGO242043
Unique NameGO242043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSF 294
            D +G  LY   PSG+ F+++A A+G RSQAA+TYLER F  F     ++L+  AL A+   T  G  L     T+A+VG G PF IL +E  +K +D F
Sbjct:  139 DRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGVELNIKNTTIAIVGKGTPFTILTEEEARKYLDGF 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  +
Sbjct:  138 DDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLE 237          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 297
            D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLER    F++    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  +
Sbjct:  137 DDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLEGLE 236          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAG 306
            DE G HL    PSG   EY   ++GSRSQ+A+TY+ER  + F +S+RE+LI  AL A+R+TL + + L     +++V+G  E + + DQ   ++ +D     G
Sbjct:  138 DESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLDKLGDKG 240          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL----QGETLKSSICTVAVVGAGEPFHILDQETVQK 279
            DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE+    F +S+++++I+  + AI  TL    QG+       TVA+VG  +PF IL  +   K
Sbjct:  138 DERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAK 234          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 285
            D+ GAHL    PSGN  E    AIG+RSQ AKTYLER  + F   +   ++LIK  + AI ++L+ E+L     ++A+VG   PF I D E V K I
Sbjct:  138 DKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234          
BLAST of GO242043 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG-ETLKSSICTVAVVGAGEPFHILDQETV 273
            D+ GAH+    PS         +IG+RSQ+A+TYLER  +NF +ST E LI  AL+A+R+TL   E L +   ++ +VG   PF +L+   V
Sbjct:  138 DKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQV 229          
The following BLAST results are available for this feature:
BLAST of GO242043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSA1_TRYBR6.145e-1543.43Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_PONAB8.025e-1539.00Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_CHICK3.050e-1437.00Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_SCHPO1.513e-1338.83Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_DROME7.511e-1340.21Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_YEAST9.810e-1344.33Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA1_CAEEL1.281e-1241.30Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank description691 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 834 5, mRNA sequence.