GO242016

Overview
NameGO242016
Unique NameGO242016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: SEC63_HUMAN (Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.816e-14
Identity = 68/228 (29.82%), Postives = 107/228 (46.93%), Query Frame = 2
Query:    5 VLASASEY-----AQLPIRPGEEEVVRRLIHHQ---RFSFENPKFTDPH-VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS------------LALL--AMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSFEVQ-----DGENVRAGEDITLQVVLER 601
            VLA ASE+          RP +  ++ +LI            P  T P+ +KA  LL +H +R ++   L+ DQ+ +L     LLQ MV+VI     ++            LA L   M++SQM  QG+ +  S LLQLPH  +D  +R   +    I+T+ DLV +++ +R  LL  + D +  ++      FP + M  + Q     D  N+  G  +T+ V L R
Sbjct:  249 VLAGASEFDPQYNKDATSRPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTR 476          
BLAST of GO242016 vs. ExPASy Swiss-Prot
Match: SEC63_MOUSE (Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.518e-13
Identity = 67/228 (29.39%), Postives = 107/228 (46.93%), Query Frame = 2
Query:    5 VLASASEY-----AQLPIRPGEEEVVRRLIHHQ---RFSFENPKFTDPH-VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS------------LALL--AMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSFEVQ-----DGENVRAGEDITLQVVLER 601
            VLA ASE+          +P +  ++ +LI            P  T P+ +KA  LL +H +R ++   L+ DQ+ +L     LLQ MV+VI     ++            LA L   M++SQM  QG+ +  S LLQLPH  +D  +R   +    I+T+ DLV +++ +R  LL  + D +  ++      FP + M  + Q     D  N+  G  +T+ V L R
Sbjct:  249 VLAGASEFDPQYNKDSTSKPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHSLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTR 476          
The following BLAST results are available for this feature:
BLAST of GO242016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SEC63_HUMAN6.816e-1429.82Translocation protein SEC63 homolog OS=Homo sapien... [more]
SEC63_MOUSE1.518e-1329.39Translocation protein SEC63 homolog OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank description664 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 807 5, mRNA sequence.