GO242003

Overview
NameGO242003
Unique NameGO242003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242003 vs. ExPASy Swiss-Prot
Match: CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana GN=CYS4 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   49 LGGWTPI-DPTEKHVMEIGQFAVTEYNKRSKSALKFESVEKAWTQVVSGTNYRLILVVKD-GPSTKKFEAIVWEKPWEHFKSLTSFKPM 309
            LG   PI + ++  V+ + ++A+ E+NK SK  L F  V +  TQVVSGT Y L +  KD G   K +EA+V EK W H KSL SFK +
Sbjct:   29 LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGKIKNYEAVVVEKLWLHSKSLESFKAL 117          
BLAST of GO242003 vs. ExPASy Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 1
Query:   97 IGQFAVTEYNKRSKSALKFESVEKAWTQVVSGTNYRLILVVKDGPSTKKFEAIVWEKPWEHFKSLTSFKPM----------IG--------GWTPIDPTEKHVMEIGQFAVTEYNKRSKSALKFENVE--KAWTQVVSG-TNYRLILVVKDGPSTKKFEAVV 519
            + +FAV E+NKR  + L+F  V +A  QVV+GT + L L   +    K +EA VW KPW  FK L  F+            +G        GW  +   +  V +    AV    +RS S   +E +E  +A  +VV     + +++ +K G   +KF+A V
Sbjct:   66 LARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFTNADLGAKKGGHEPGWRDVPVHDPVVKDAADHAVKSIQQRSNSLFPYELLEIVRAKAEVVEDFAKFDILMKLKRGNKEEKFKAEV 227          
The following BLAST results are available for this feature:
BLAST of GO242003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CYT4_ARATH2.939e-1144.94Cysteine proteinase inhibitor 4 OS=Arabidopsis tha... [more]
CYT12_ORYSJ3.838e-1130.86Cysteine proteinase inhibitor 12 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank description651 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 794 5, mRNA sequence.