GO241920

Overview
NameGO241920
Unique NameGO241920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.109e-41
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELKHELKQG+KEKIVDIREEI+RKRRAGKLPGDTTS+LK WW +H+KWPYPTEEDKA+LVQETGLQLKQINNWFINQRKRNW++N
Sbjct:  281 ELKHELKQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSN 365          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.322e-38
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELK ELKQG+K +I D+REEILRKRRAGKLPGDTTS+LK WW  H+KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH N
Sbjct:    4 ELKLELKQGFKSRIEDVREEILRKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.408e-37
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELK ELKQG+K +I D+REEILRKRRAGKLPGDTT++LK WW  H+KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH N
Sbjct:  218 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 302          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.352e-37
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELK ELKQG+K +I D+REEI+RKRRAGKLPGDTT++LK WW  H KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH N
Sbjct:  194 ELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 278          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.352e-37
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 263
            ELK ELKQG+K +I D+REEI+RKRRAGKLPGDTT++LK WW  H KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH N
Sbjct:  197 ELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 281          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS1_ORYSJ (Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 HELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            HELK  L + Y   +  +R E L+KR+ GKLP D  S L  WW +H +WPYPTEEDK RL   TGL  KQINNWFINQRKR+W
Sbjct:  187 HELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRHW 269          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOSA_ORYSJ (Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. japonica GN=OSH71 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 HELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            HELK  L + Y   +  +R E L+KR+ GKLP D  S L  WW +H +WPYPTEEDK RL   TGL  KQINNWFINQRKR+W
Sbjct:  196 HELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 278          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOSA_ORYSI (Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. indica GN=OSH71 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 HELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            HELK  L + Y   +  +R E L+KR+ GKLP D  S L  WW +H +WPYPTEEDK RL   TGL  KQINNWFINQRKR+W
Sbjct:  196 HELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 278          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNX11_MAIZE (Homeobox protein knotted-1-like 11 (Fragment) OS=Zea mays GN=KNOX11 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK  L + Y   +  +R E L+KR+ GKLP D  S L  WW +H +WPYPTEEDK RL   TGL  KQINNWFINQRKR+W
Sbjct:    4 ELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAATGLDPKQINNWFINQRKRHW 85          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX5_MAIZE (Homeobox protein knotted-1-like 5 (Fragment) OS=Zea mays GN=KNOX5 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK  L + Y   +  +R E L+KR+ GKLP D  S L  WW +H +WPYPTEEDK RL   TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 82          
The following BLAST results are available for this feature:
BLAST of GO241920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
KNAT5_ARATH6.109e-4188.24Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNOX1_MAIZE6.322e-3882.35Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOS3_ORYSJ1.408e-3781.18Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]
KNAT7_ARATH5.352e-3780.00Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
HD1_BRANA5.352e-3780.00Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
KNOS1_ORYSJ5.745e-2359.04Homeobox protein knotted-1-like 1 OS=Oryza sativa ... [more]
KNOSA_ORYSJ7.503e-2359.04Homeobox protein knotted-1-like 10 OS=Oryza sativa... [more]
KNOSA_ORYSI7.503e-2359.04Homeobox protein knotted-1-like 10 OS=Oryza sativa... [more]
KNX11_MAIZE4.863e-2258.54Homeobox protein knotted-1-like 11 (Fragment) OS=Z... [more]
KNOX5_MAIZE6.351e-2258.54Homeobox protein knotted-1-like 5 (Fragment) OS=Ze... [more]

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Properties
Property NameValue
Genbank description568 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 710 5, mRNA sequence.