GO241920

Overview
NameGO241920
Unique NameGO241920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: HLG3_MAIZE (Homeobox protein liguleless 3 (Fragment) OS=Zea mays GN=LG3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK  L + Y   +  +R E L+KR+ GKLP D  ++L  WW +H +WPYPTEEDK RL   TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARTVLLEWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 82          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX3_HORVU (Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELKH L + Y   +  +++E+ +K++ GKLP +    L +WW  H KWPYP+E  K  L + TGL LKQINNWFINQRKR+W
Sbjct:  246 ELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHW 327          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELKH L + Y   +  +++E+ +K++ GKLP D    L  WW  H KWPYP+E  K  L + TGL LKQINNWFINQRKR+W
Sbjct:  242 ELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHW 323          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KN1_MAIZE (Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.198e-20
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELKH L + Y   +  +++E+ +K++ GKLP +    L +WW  H KWPYP+E  K  L + TGL LKQINNWFINQRKR+W
Sbjct:  242 ELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWDQHYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRHW 323          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.552e-20
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK +L + Y   +  +++E ++KR+ GKLP +    L  WWL H KWPYP+E  K  L + TGL  KQINNWFINQRKR+W
Sbjct:  237 ELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 318          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.764e-20
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK+ L + Y   +  +++E+ +K++ GKLP D    L +WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  279 ELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KN1_SOLLC (Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.324e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK+ L + Y   +  +++E+ +K++ GKLP D    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  236 ELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLITWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK +L + Y   +  +++E ++KR+ GKLP +    L  WW  H KWPYP+E+ K  L + TGL  KQINNWFINQRKR+W
Sbjct:  263 ELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 344          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK +L + Y   +  +++E ++KR+ GKLP +    L  WW  H KWPYP+E+ K  L + TGL  KQINNWFINQRKR+W
Sbjct:  262 ELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 343          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS8_ORYSJ (Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica GN=OSH43 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            +LKH+L + Y   + D+R+   ++ + GKLP +    L  WW  H KWPYP+E +K  L Q TGL  KQINNWFINQRKR+W   P
Sbjct:  207 QLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTP 292          
The following BLAST results are available for this feature:
BLAST of GO241920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HLG3_MAIZE8.295e-2257.32Homeobox protein liguleless 3 (Fragment) OS=Zea ma... [more]
KNOX3_HORVU9.171e-2151.22Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3... [more]
KNOS6_ORYSJ9.171e-2152.44Homeobox protein knotted-1-like 6 OS=Oryza sativa ... [more]
KN1_MAIZE1.198e-2051.22Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=... [more]
LET6_SOLLC4.552e-2051.22Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
KNAP2_MALDO7.764e-2050.00Homeobox protein knotted-1-like 2 OS=Malus domesti... [more]
KN1_SOLLC1.324e-1950.00Homeotic protein knotted-1 OS=Solanum lycopersicum... [more]
STM_BRAOL1.730e-1950.00Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
STM_ARATH1.730e-1950.00Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
KNOS8_ORYSJ2.259e-1948.84Homeobox protein knotted-1-like 8 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank description568 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 710 5, mRNA sequence.