GO241920

Overview
NameGO241920
Unique NameGO241920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK+ L + Y   +  +++E+ +K++ GKLP +    L +WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  280 ELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 361          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: RSH1_MAIZE (Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK++L + Y   +  +R+E  +K++ GKLP +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  232 ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 313          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK+ L + Y   +  +++E+ +K++ GKLP +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  279 ELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK++L + Y   +  +R+E  +K++ GKLP +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHW 82          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            +LK +L + +   I  ++ E  +K++ GKLP +    L  WW  H KWPYPTE DK  L +ETGL  KQINNWFINQRKR+W
Sbjct:  208 DLKDQLLRKFGSHISSLKLEFSKKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHW 289          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 3
Query:    6 HELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ++LK+ L   Y   +  +  E+ RK++ GKLP D    L  WW  H +WPYP+E +KA L + TGL+ KQINNWFINQRKR+W
Sbjct:    3 NDLKNRLLNKYSGYLSSLWRELSRKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHW 85          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX8_MAIZE (Homeobox protein knotted-1-like 8 (Fragment) OS=Zea mays GN=KNOX8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELKH+L + Y   +  +R+E  ++++ GKLP +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHW 82          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica GN=OSH15 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK +L + Y   +  +R+E  +K++ GKLP +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  236 ELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica GN=OSH15 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK +L + Y   +  +R+E  +K++ GKLP +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  236 ELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            ELK  L   Y   +  +  E+ +K++ GKLP D    L  WW  H +WPYP+E +KA L + TGL  KQINNWFINQRKR+W   P
Sbjct:  200 ELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHWKPTP 285          
The following BLAST results are available for this feature:
BLAST of GO241920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
KNAP1_MALDO2.259e-1948.78Homeobox protein knotted-1-like 1 OS=Malus domesti... [more]
RSH1_MAIZE2.950e-1950.00Homeobox protein rough sheath 1 OS=Zea mays GN=RS1... [more]
KNAT1_ARATH2.950e-1948.78Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
KNOX4_MAIZE3.853e-1950.00Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]
KNAT2_ARATH5.033e-1951.22Homeobox protein knotted-1-like 2 OS=Arabidopsis t... [more]
KNX10_MAIZE6.573e-1949.40Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]
KNOX8_MAIZE6.573e-1950.00Homeobox protein knotted-1-like 8 (Fragment) OS=Ze... [more]
KNOSC_ORYSJ6.573e-1950.00Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOSC_ORYSI6.573e-1950.00Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOS4_ORYSJ6.573e-1948.84Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank description568 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 710 5, mRNA sequence.