GO241920

Overview
NameGO241920
Unique NameGO241920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            +LK +L + Y   +  +++E ++KR+ GKLP +    L  WW  H KWPYP+E  K  L + TGL  KQINNWFINQRKR+W
Sbjct:  261 DLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 342          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOX3_MAIZE (Homeobox protein knotted-1-like 3 (Fragment) OS=Zea mays GN=KNOX3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.121e-18
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            ELK +L + Y   + ++R+E+ +KR+  KLP +    L +WW  H +WPYP+E +K  L + TGL+ KQINNWFINQRKR+W
Sbjct:    4 ELKKQLLRKYSGCLGNLRKELCKKRKKDKLPKEARQKLLSWWELHYRWPYPSEMEKIALAESTGLEQKQINNWFINQRKRHW 85          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.260e-18
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            +LK  L + +  +I  ++ E  +K++ GKLP +    L  WW  H KWPYPTE DK  L   TGL  KQINNWFINQRKR+W
Sbjct:  224 DLKDRLLRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHW 305          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS9_ORYSJ (Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica GN=Os03g0772100 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.114e-17
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            +LKH+L   Y   + D+R+   ++ + GKLP +    L  WW L + KWPYP+E +K  L Q TGL  KQI+NWFINQRKR+W   P
Sbjct:  208 QLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTP 294          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS7_ORYSJ (Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica GN=OSH3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.802e-16
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   12 LKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 254
            LK  L + Y   +  +R+E+ +KR+ GKLP +    L  WW  H +WP P+E +K  L + TGL+ KQINN FINQRKR+W
Sbjct:  228 LKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHW 308          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: KNOS5_ORYSJ (Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 3
Query:   75 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 266
            +K   G LP D    L  WW  H +WPYP+E +KA L + TGL  KQ+ NWFINQRKR+W   P
Sbjct:  229 KKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTNWFINQRKRHWKPKP 292          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: HBX9_DICDI (Homeobox protein 9 OS=Dictyostelium discoideum GN=hbx9 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 3
Query:   33 GYKEKIVDI--REEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 248
            G  E ++ +     I+++++ GKLPG+ TS+LK W   H   PYPTEE+K  L   T L   QINNWF N R+R
Sbjct:  543 GNNENVIGVPFTGSIVKRKKRGKLPGEATSILKKWLFEHNMHPYPTEEEKVALANSTFLSFNQINNWFTNARRR 616          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: ME3L2_HUMAN (Putative homeobox protein Meis3-like 2 OS=Homo sapiens GN=MEIS3P2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   54 DIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 248
            D+ +E  R ++ G  P   T++++AW   H   PYP+EE K +LVQ+TGL + Q+NNWFIN R+R
Sbjct:  238 DLDQEPRRNKKRGIFPKVATNIMRAWLFQHLWHPYPSEEQKKQLVQDTGLTILQVNNWFINARRR 302          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: MEIS3_HUMAN (Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   54 DIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 248
            D+ +E  R ++ G  P   T++++AW   H   PYP+EE K +L Q+TGL + Q+NNWFIN R+R
Sbjct:  255 DLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 319          
BLAST of GO241920 vs. ExPASy Swiss-Prot
Match: ME3L1_HUMAN (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   54 DIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 248
            D+ +E  R ++ G  P   T++++AW   H   PYP+EE K +L Q+TGL + Q+NNWFIN R+R
Sbjct:  154 DLDQEPRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 218          
The following BLAST results are available for this feature:
BLAST of GO241920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HSBH1_SOYBN6.573e-1948.78Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]
KNOX3_MAIZE1.121e-1848.78Homeobox protein knotted-1-like 3 (Fragment) OS=Ze... [more]
KNAT6_ARATH4.260e-1850.00Homeobox protein knotted-1-like 6 OS=Arabidopsis t... [more]
KNOS9_ORYSJ2.114e-1747.13Homeobox protein knotted-1-like 9 OS=Oryza sativa ... [more]
KNOS7_ORYSJ6.802e-1646.91Homeobox protein knotted-1-like 7 OS=Oryza sativa ... [more]
KNOS5_ORYSJ1.283e-1451.56Putative homeobox protein knotted-1-like 5 OS=Oryz... [more]
HBX9_DICDI1.201e-1244.59Homeobox protein 9 OS=Dictyostelium discoideum GN=... [more]
ME3L2_HUMAN1.016e-1146.15Putative homeobox protein Meis3-like 2 OS=Homo sap... [more]
MEIS3_HUMAN1.327e-1144.62Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE... [more]
ME3L1_HUMAN1.327e-1144.62Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank description568 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 710 5, mRNA sequence.