GO241919

Overview
NameGO241919
Unique NameGO241919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_HALSA (50S ribosomal protein L23P OS=Halobacterium salinarium GN=rpl23p PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            I+ YPL TE AM +++  N L FIVDI A K +I+D V+  Y++    VNT I P+  KKA V+L+ + DA DVA++IG+
Sbjct:    4 IIDYPLVTEKAMDEMDFQNKLQFIVDIDAAKPEIRDVVESEYDVTVVDVNTQITPEAEKKATVKLSAEDDAQDVASRIGV 83          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_METM6 (50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  241 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +D + ++K P+ +E  MK IE+ N LVF V+ +A K  I  A+K++++ +   +NT I P G KKAY+ L  +Y+A +VA  +GI
Sbjct:    1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADISAAIKELFDAEVADINTSITPKGKKKAYITLKAEYNAGEVAASLGI 85          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_ARCFU (50S ribosomal protein L23P OS=Archaeoglobus fulgidus GN=rpl23p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 34/80 (42.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            ++K  L TE ++ ++E  N L  IVD+RA K  IK  ++K++ ++ ++VNTLI P G KKAY++L PDY A ++ +K+G+
Sbjct:    4 LIKCFLVTEKSVAELE-KNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKLKPDYSAEEILSKLGV 82          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_HALMA (50S ribosomal protein L23P OS=Haloarcula marismortui GN=rpl23p PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  250 YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ Y++  ++VNT    DG KKA VRL+ D DA +VA++IG+
Sbjct:    3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRIGV 84          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_HALWD (50S ribosomal protein L23P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +++YPL TE AM +++ +N L FIVD  A K +I++ ++  YEI      T I P   KKA VRL+ D DA D+A++IG+
Sbjct:    4 LIEYPLVTEKAMDEMDFDNKLQFIVDTDATKDEIENEIESRYEITIIDTKTQITPRAKKKATVRLSDDDDAQDIASRIGV 83          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_METTH (50S ribosomal protein L23P OS=Methanobacterium thermoautotrophicum GN=rpl23p PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 28/85 (32.94%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  241 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +D Y ++  P  TE +M  I+ NN L F+V  ++ K+ ++ A ++++ ++ ++VNT + P G K AY++L  ++ A D+A K+G+
Sbjct:    1 MDPYAVIMKPHVTEKSMNLIDQNNELAFVVMRKSTKKDVRRAFEELFAVKVERVNTQVTPRGQKIAYIKLAKEHSAEDIAVKLGV 85          
The following BLAST results are available for this feature:
BLAST of GO241919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL23_HALSA3.390e-1347.5050S ribosomal protein L23P OS=Halobacterium salina... [more]
RL23_METM64.427e-1340.0050S ribosomal protein L23P OS=Methanococcus maripa... [more]
RL23_ARCFU5.782e-1342.5050S ribosomal protein L23P OS=Archaeoglobus fulgid... [more]
RL23_HALMA7.552e-1343.9050S ribosomal protein L23P OS=Haloarcula marismort... [more]
RL23_HALWD2.429e-1143.7550S ribosomal protein L23P OS=Haloquadratum walsby... [more]
RL23_METTH5.412e-1132.9450S ribosomal protein L23P OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank description567 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 709 5, mRNA sequence.