GO241915

Overview
NameGO241915
Unique NameGO241915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 244
            G  +FG E +F+P       EE DGY++ F HDEK  KS + +++A+ +  +  A ++LP RVPYGFH  F+  + L +QA
Sbjct:  541 GEEKFGGEPLFLPN----GEEEGDGYILAFVHDEKEWKSELQIVNAQNLKLE--ASIKLPSRVPYGFHGTFIHSKDLRKQA 615          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSE-EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 244
            G  ++G E  F+PR  G  S+ EDDGY++ F HDE++ +S +++++A T+  +  A V+LP RVPYGFH  FV+   +  QA
Sbjct:  512 GGKKYGGEPFFLPR--GLESDGEDDGYIMSFVHDEESWESELHIVNAVTLELE--ATVKLPSRVPYGFHGTFVNSADMLNQA 589          
BLAST of GO241915 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 2
Query:    2 GPGRFGSEAVFVPREPGTSSE-EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 241
            G  ++G E  F+P   G   E EDDGY+    HDE+T  S + +I+A  +  +  A ++LP RVPYGFH  FV   +L +Q
Sbjct:  504 GGEKYGGEPFFLPGNSGNGEENEDDGYIFCHVHDEETKTSELQIINAVNLKLE--ATIKLPSRVPYGFHGTFVDSNELVDQ 582          
The following BLAST results are available for this feature:
BLAST of GO241915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED1_PHAVU8.198e-1240.749-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED5_ARATH2.385e-1142.68Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED2_ARATH6.940e-1140.749-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]

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Properties
Property NameValue
Genbank description563 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 705 5, mRNA sequence.