GO241906

Overview
NameGO241906
Unique NameGO241906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 48/183 (26.23%), Postives = 87/183 (47.54%), Query Frame = 3
Query:  147 NGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            +  + V    +D +V ++     +C+   + +   V +   +   +L+     S    + D ++ K+   L GH     +  +HP G  +ASG+ DT  +LWD+R     +   KG+  A+R L+F+ DG++LA A     V ++D  +G +  +  +  G +  I F P+   L  G ADRT
Sbjct:   31 SSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKG-CVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRT 212          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 50/182 (27.47%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  153 SKRVIAAN-NDAKVRIFDAENFSCLNRFSYDWS-VNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            S R++A   +D +V ++     +C+   +   S V +  ++   +L+     S    + D ++ K+   L GH     +  +HP G  +ASG+QDT  +LWDIR     +   +G+  A+R L+F+ DG++LA A     V ++D  +G +  +     G +  + F P+   L  G +DRT
Sbjct:   32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRR-KGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRT 212          

HSP 2 Score: 68.9366 bits (167), Expect = 5.305e-11
Identity = 49/177 (27.68%), Postives = 86/177 (48.59%), Query Frame = 3
Query:  162 VIAANNDAKVRIFDAENFSCLNRF-SYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDL--FGEIAGISFSPDTESLFVGVA 683
            V + + D  ++++D     C+ R+  +  +V     SPDGK LA   D     + D  +GK+     GH        +HP+  +LASG+ D T R WD+    Q ++ ++G  G +R++ F  DG  L  +   D + V+  E    +C ++ L  +G++A ++   D     +GVA
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKF-QVVSCIEGEPGPVRSVLFNPDGCCL-YSGCQDSLRVYGWEP--ERCFDVVLVNWGKVADLAICNDQ---LIGVA 289          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 50/182 (27.47%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  153 SKRVIAAN-NDAKVRIFDAENFSCLNRFSYDWS-VNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            S R++A   +D +V ++     +C+   +   S V +  ++   +L+     S    + D ++ K+   L GH     +  +HP G  +ASG+QDT  +LWDIR     +   +G+  A+R L+F+ DG++LA A     V ++D  +G +  +     G +  + F P+   L  G +DRT
Sbjct:   32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRR-KGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRT 212          

HSP 2 Score: 68.9366 bits (167), Expect = 5.305e-11
Identity = 49/177 (27.68%), Postives = 86/177 (48.59%), Query Frame = 3
Query:  162 VIAANNDAKVRIFDAENFSCLNRF-SYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDL--FGEIAGISFSPDTESLFVGVA 683
            V + + D  ++++D     C+ R+  +  +V     SPDGK LA   D     + D  +GK+     GH        +HP+  +LASG+ D T R WD+    Q ++ ++G  G +R++ F  DG  L  +   D + V+  E    +C ++ L  +G++A ++   D     +GVA
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKF-QVVSCIEGEPGPVRSVLFNPDGCCL-YSGCQDSLRVYGWEP--ERCFDVVLVNWGKVADLAICNDQ---LIGVA 289          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.154e-12
Identity = 47/181 (25.97%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  153 SKRVIAANNDAKVRIFD-AENFSCLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            S+ ++    D KV ++   +  + L+ + +   +++ +      L+A    S    + D +  K+   L GH     +  +HP G   ASG+ DT  ++WDIR     +   KG+   +  L+FT DGR++      + V V+D  +G +  +     G+I  + F P    L  G ADRT
Sbjct:   29 SRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRT 208          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.813e-12
Identity = 46/186 (24.73%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  141 SPNGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESG-YVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            SP+G K + +A+ D  ++I+ A +         +   +++ + S D KL+    D     I D +SGK+   LKGH +Y F  +++P   ++ SG+ D   R+WD+ N  +   ++  +   +  + F  DG  +        V ++DT +G  +     +   E++ + FSP+ + +  G  D T
Sbjct:   55 SPDG-KWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDV-NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNT 238          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.674e-12
Identity = 48/185 (25.95%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  141 SPNGSKRVIAANNDAKVRIFDAENFSCLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESG-YVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            SP+G + + + + D  ++I+  +         +   +N  S S D KL+    D     + D  SG+    LKGH +Y F   ++P G ++ASG+ D T R+W  RN   ++  + G+   + ++ F  DG +LA       V ++D+ +G  VK    +    I  + FSP+ + +     + T
Sbjct:  116 SPDG-RYMGSGSADCSIKIWRMDFVYEKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARN-GNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNT 298          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: YQ95_SCHPO (Uncharacterized WD repeat-containing protein C18.05c OS=Schizosaccharomyces pombe GN=SPCC18.05c PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.267e-12
Identity = 37/132 (28.03%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  156 KRVIAANNDAKVRIFDAENFS--CLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLA 545
            +R+++A++D ++ ++D +  +        +   VN+ S SPDG+ +A     +   + D ++GK    L+GH+   +  AW  D R+L S +QDTT ++WD+R+       L G+   + A+ ++ DG+ +A
Sbjct:  359 ERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVRSKKMKFD-LPGHEDQVFAVDWSPDGQRVA 489          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.185e-12
Identity = 46/148 (31.08%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  249 VNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            VN ++ SPDG+ L    D     +   +SG++   L GH     +  + PDGR++AS + D + RLWD+   S+ L VLKG+  ++  + F+ D + LA         V++ +SG      +     I    FSP ++SL  G  D T
Sbjct:   29 VNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVAR-SKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDST 175          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.185e-12
Identity = 46/193 (23.83%), Postives = 88/193 (45.60%), Query Frame = 3
Query:  117 TNTVDVFQSPNGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            +N   +    +  + +    +D +V ++     +C+   + +   + +  +S   +L+     S    + D ++ K+   L GH     +  +HP G  +ASG+ DT  +LWD+R     +   K +  A+R L+F+ DG++LA A     V ++D  +G V  +     G +  + F P    L  G +DRT
Sbjct:   21 SNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRR-KGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRT 212          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: YN19_SCHPO (Uncharacterized WD repeat-containing protein C577.09 OS=Schizosaccharomyces pombe GN=SPBC577.09 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.396e-11
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 3
Query:  180 DAKVRIFDAENFSCLNRFSYDWSVNNTSVSPDGK--LLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGR-ILASGNQDTTCRLWDIRNLSQSLTVLK-------------GNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESG 593
            D  ++++D         F+ +  + + + SP     L+A    S+   + D QSG  T +L GH     A  W P    +LASG+ D TCRLWDIR +S S   +               + G +  L +TSD R+LA     D + V++ ESG
Sbjct:  125 DHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESG 278          
The following BLAST results are available for this feature:
BLAST of GO241906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
KTNB1_XENTR2.154e-1226.23Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_MOUSE2.154e-1227.47Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN2.154e-1227.47Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
KTNB1_ARATH2.154e-1225.97Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
WDR5_DICDI2.813e-1224.73WD repeat-containing protein 5 homolog OS=Dictyost... [more]
YZLL_CAEEL3.674e-1225.95Uncharacterized WD repeat-containing protein K04G1... [more]
YQ95_SCHPO6.267e-1228.03Uncharacterized WD repeat-containing protein C18.0... [more]
WDR38_MOUSE8.185e-1231.08WD repeat-containing protein 38 OS=Mus musculus GN... [more]
KTNB1_CHICK8.185e-1223.83Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
YN19_SCHPO1.396e-1130.52Uncharacterized WD repeat-containing protein C577.... [more]

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Properties
Property NameValue
Genbank description554 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 694 5, mRNA sequence.