GO241906

Overview
NameGO241906
Unique NameGO241906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.929e-11
Identity = 49/179 (27.37%), Postives = 90/179 (50.28%), Query Frame = 3
Query:   69 PGVAF-CTNLTTDDNAITNTVDVFQSPNGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWH-PDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGY 596
            P VAF CT+  +        V    SP+GS  + + + D  V ++DA   + +N  + +   V++ + +P+G+ LA   D     + DA++G     L GH +Y F   +    G +LASG+ D T RLWD+R+  + L  +  +   + +  F+ DG  +  +     + ++DT++G+
Sbjct:   26 PTVAFRCTHALSGHTKAVAAVKF--SPDGSL-LASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRS-GRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGH 200          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 48/180 (26.67%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  162 VIAANNDAKVRIFDAENFSCLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVK---CQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            + +A+ D  V ++  +         +  S+     SP+GK+ A  G      I D   G +   LKGH D  ++ ++ PDG ILAS ++D T RLW  R+  ++L VL G+  ++   +F+ DG+ L        + ++D +   ++     E+  F    G+++ P+   L V   D T
Sbjct:  575 IASASRDGTVHLWTPQGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDL-DGNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRS-GKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLDGNLIRQFGLPEVAFF----GVNWHPNGNLLAVAADDGT 748          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: WDR88_HUMAN (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 53/188 (28.19%), Postives = 87/188 (46.28%), Query Frame = 3
Query:  153 SKRVIAANNDAKVRIFDAENFSCLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECL-IADAQSGKVTGNLKGHLDYSFASA-WHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLF------GEIAGISFSPDTESLFVGVADRT 692
            S RVIAA+ D  VR +D E    L +  YD  + +   SPDGK +    D    + I DA++      +K H   S  S  + PD + +AS + D   ++WD+ + +  LT+ K +  AI    FT  G FL  +     + +++  +G  + +   +       G ++   F+ D+  L  G  DRT
Sbjct:  157 SSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNRGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRT 344          
BLAST of GO241906 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 47/178 (26.40%), Postives = 82/178 (46.07%), Query Frame = 3
Query:  162 VIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRT 692
            +++++ D  VR++  + F+CL  +  +++ V +T  SP G      G      +      +      GHL     + +HP+   +A+G+ D T RLWD+ N    + +  G+ G I +L F+ +GRFLA       V ++D   G +  +       +  + FS D E L  G  D T
Sbjct:  558 LLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLN-GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNT 734          
The following BLAST results are available for this feature:
BLAST of GO241906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
MUT11_CHLRE6.929e-1127.37Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
Y143_SYNY39.050e-1126.67Uncharacterized WD repeat-containing protein slr01... [more]
WDR88_HUMAN9.050e-1128.19WD repeat-containing protein 88 OS=Homo sapiens GN... [more]
TAF5_HUMAN9.050e-1126.40Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank description554 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 694 5, mRNA sequence.