GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 114/247 (46.15%), Postives = 161/247 (65.18%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVM 741
            IVDTAGRL ID  +M +   ++  +NP EVL V+DAM GQ+A T    F   +G TG +LTKLDGD+RGGAALSV+EV+G PI     GE+++D + F+PDRMA RILGMGDVLS +E+A++V   E AE    KI++      DFL+Q   V +MG +  ++GM+PG G++     +  +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T   V+QLV + F+ R  M +++G M
Sbjct:  194 IVDTAGRLGIDDELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.713e-57
Identity = 115/246 (46.75%), Postives = 173/246 (70.33%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            I DTAGR QIDKAMM+E   +K+++ PTE LLV+D+MTGQ+A    ++FN ++ I+G IL+++DGDS+GGAALSVK ++ KPIK +  GE + DLE F  +R+A RIL MGD++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MTP+ER+ P+++  S  RRKR+A  +G T Q V+ L+ Q  Q+   MK +
Sbjct:  189 IYDTAGRTQIDKAMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 115/247 (46.56%), Postives = 160/247 (64.78%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVM 741
            IVDTAGRL ID+ +M +   ++  +NP EVL V+DAM GQ+A T    F   +G TG  LTKLDGD+RGGAALSV+EV+G PI     GE++ED + F+PDRMA RILGMGDVLS +E+A++V   + AEE   KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T   V+QLV + F+ R  M +++G M
Sbjct:  194 IVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 115/247 (46.56%), Postives = 160/247 (64.78%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVM 741
            IVDTAGRL ID+ +M +   ++  +NP EVL V+DAM GQ+A T    F   +G TG  LTKLDGD+RGGAALSV+EV+G PI     GE++ED + F+PDRMA RILGMGDVLS +E+A++V   + AEE   KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T   V+QLV + F+ R  M +++G M
Sbjct:  194 IVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.450e-56
Identity = 114/244 (46.72%), Postives = 170/244 (69.67%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            I DTAGR QIDK MM+E   +K+++ PTE LLV+D+MTGQ+A     +FN ++ I+G IL+++DGDS+GGAALSVK ++ KPIK +  GE++ DLE F  +R+A RIL MGD++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MT +ERE P+++  S  RRKR+A  +G T Q V+ L+ Q  Q+   MK
Sbjct:  189 IYDTAGRTQIDKEMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.228e-55
Identity = 113/244 (46.31%), Postives = 171/244 (70.08%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            I DTAGR+QID  MM+E   +K++LNPTE LLV+D+MTGQ+A     TF+ ++ I+G IL+++DGD++GGAALSVK  + KPIK +  GE++ DLE F  +R+A RIL MGD++SFV+KA  ++ +E+AE+   K+ S  FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MT +ER+ P+++  S  RRKR+A  +G T Q V+ L+ Q  Q+   MK
Sbjct:  189 IYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.572e-55
Identity = 111/254 (43.70%), Postives = 166/254 (65.35%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVA---QLFQMRVRMKNLMGVME 744
            IVD+AGRL IDK +M ELK+VK VLNP EVL V DA++GQ+      TFN EIG++G +L+K D DS+GG AL +    G P++ +G GE++ DL+ F P+R+ GR++G GD++S  EK   V+   +A+++ KK+    F FNDFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +ERE PE+L  S  RRKR+A  SG     +++++    Q  +M  R+ N  G+ +
Sbjct:  180 IVDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGISD 431          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.039e-54
Identity = 110/244 (45.08%), Postives = 169/244 (69.26%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            I DTAGR QID+ MM+E   +K+++ PTE LLV+D+MTGQ+A    ++FN ++ I+G IL+++DGDS+GGAALSVK ++ +PIK +  GE++ DLE F   R+A RIL MGD++SFVEKA  ++ +E AE+   K+    FD ND+L+Q +++ ++G    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MTP+ER  P+++  S  RRKR+A  +G T Q V+ L+ Q  Q+   MK
Sbjct:  189 IYDTAGRTQIDQEMMNEAIAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDGDSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS--RRKRIALGAGTTVQKVNILLKQFKQISDMMK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.357e-54
Identity = 111/244 (45.49%), Postives = 169/244 (69.26%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            I DTAGR+QID  MM+E   +K++LNPTE LLV+D+MTGQ+A     +F+ ++ I+G IL+++DGD++GGAALSVK ++ KPIK +  GE++ DLE F  +R+A RIL MGD++SFV+KA  ++ +E+AE    K+ S  FD ND+LK  R++ +MG    ++ M+PG GKI   Q+ +++   +I+   EA+I +MT +ER+ P+++  S  RRKR+A  +G T Q V+ L+ Q  Q+   MK
Sbjct:  189 IYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVVTARSFSDKLEISGLILSRIDGDTKGGAALSVKYLTQKPIKFLSCGEKLTDLEEFDAERLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.024e-54
Identity = 108/254 (42.52%), Postives = 166/254 (65.35%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVA---QLFQMRVRMKNLMGVME 744
            +VD+AGRL IDK +M ELK+VK +LNP EVL V DA++GQ+      TFN EIG++G +L+K D DS+GG AL +    G P++ +G GE++ DL+ F P+R+ GR++G GD++S  EK   V+   +A+++ KK+    F FNDFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +E+E PE+L  S  RRKR+A  SG     +++++    Q  +M  R+ N  G+ +
Sbjct:  180 LVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGISD 431          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_MYCLE1.312e-5746.15Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_RICCN1.713e-5746.75Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_MYCTU2.238e-5746.56Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO2.238e-5746.56Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_RICFE1.450e-5646.72Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICPR1.228e-5546.31Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_HELPJ3.572e-5543.70Signal recognition particle protein OS=Helicobacte... [more]
SRP54_RICBR1.039e-5445.08Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICTY1.357e-5445.49Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_HELPY3.024e-5442.52Signal recognition particle protein OS=Helicobacte... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.