GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HAEIN (Signal recognition particle protein OS=Haemophilus influenzae GN=ffh PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 5.158e-54
Identity = 112/245 (45.71%), Postives = 162/245 (66.12%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGRL +D  MMDE+K V   LNP E L  VDAMTGQ+AA     FN  + +TG ILTK+DGD+RGGAALS+++++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +E AE+M +K     +F  +DF +Q   + +MG M  ++  +PG   ++     + +  + + MEA+I +MT +ER  P+++  S  RR+R+A  SG   Q V++L+ Q  +M+  MK +
Sbjct:  188 IVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNLSEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKM 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.113e-48
Identity = 92/256 (35.94%), Postives = 168/256 (65.62%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALS 768
            I+DTAGRLQ+D+ +M EL ++K+  +P E+LLVVD M+GQE   +   FN ++ ++G ++TKLDGD+RGGA LS+  ++  PIK +G GE    L  FYP RMA R++GMGD+ +  E+A E + +   ++   ++    FD  D   Q   +A+MGS+++++ M+P + K++ +Q++EA++ L +   ++++MT +ER  P +L ++  R+ R+ + SG++E+  ++L+    + + ++  +  +++SG +P LS
Sbjct:  188 ILDTAGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDIETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQIQEAQRKLAVFSILMDSMTLKERRDPRVL-KAISRKNRIIKGSGRSEKEFNELINSFEKGKKQVLEITKMIKSGRMPNLS 441          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.454e-48
Identity = 95/253 (37.55%), Postives = 162/253 (64.03%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLP 759
            I DTAGRLQ ++ +MDEL  VK  LNP E+++VVD ++GQE   +  TF+  + +TG I++KLD D+R GAALS+  +   PIKL+G  E+++ LE F+P+R+A RILG+GDV+S VEKA++V  ++D  +   K+     D  D L   + + +MGS+S +I M+P    ++       E  +++ + +I +MT EER  P+L+   P R++R+ + SG+    +++L+ +  +M+++   +  ++++GS P
Sbjct:  186 ICDTAGRLQTNETLMDELVSVKNELNPDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAALSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSNP 438          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.742e-47
Identity = 93/253 (36.76%), Postives = 157/253 (62.06%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLP 759
            I DTAGRLQ ++ +MDEL  +K  L+P E+L+VVD ++GQE   +   F+  + +TG I+TKLD D+R GAALS+  +   PIKL+G  E++  LE F+P+R+A RILG+GDV++ VEKA+EV  ++   +   K+     D  D L     + +MGS+S ++ M+PG   ++   V   E  +K+ + +I +MT EER  P+L+   P R++R+ + SG+    +++L+ +  +++ +   +  +++ G  P
Sbjct:  186 ICDTAGRLQTNQELMDELVAIKNELHPDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAALSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSKLQTKTAEMGRMLKGGKNP 438          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.716e-45
Identity = 97/246 (39.43%), Postives = 159/246 (64.63%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            ++DTAGRL IDK MM+E++ ++ +    E LL+VD+M GQ+A  +   FN ++ I+G ILTK DGDSR G ALS++ ++GKPIK +G GE++  LEPF+P+R+A RILGM D++S +E  +E + Q   +++ KK+    +F+ NDFL Q + + ++G ++          +++   + +   + +LK +EAMI +MTP+ER KP ++  S  R++R+A  SG   Q V++L+     +R  MK +
Sbjct:  188 LIDTAGRLHIDKKMMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLLKNFDDIRRIMKKI 431          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.172e-44
Identity = 98/245 (40.00%), Postives = 149/245 (60.82%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVD+AGR + +K++++E+K +   + P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GER++DLEPF P R   R+LG+GD+   +EK +E+  QQE  EE  +K +   F+  D   Q   + +MG + +++ MIPGMG   P   VR  E+ LK  + ++++MT EE E PE++  S  R KR+A+ SG + Q V +L+ Q  QM+   K++
Sbjct:  187 IVDSAGRHKEEKSLIEEMKQISAAIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.837e-44
Identity = 96/245 (39.18%), Postives = 147/245 (60.00%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVD+AGR + +K +++E++ +   + P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GER++DLEPF P R   R+LG+GD+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P   VR  E+ LK  + ++++MT EE E PE++  S  R KR+A+ SG T   V +L+ Q  QM+   K+L
Sbjct:  187 IVDSAGRHKEEKGLIEEMRQISEAIKPHEVILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.839e-44
Identity = 96/245 (39.18%), Postives = 148/245 (60.41%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGR + +  +++E+K +   + P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GE+++DLEPF P R   R+LG+GD+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P + VR  E+ L+    ++++MT EE E P+++  S  R KR+A+ SG + + V +L+AQ  QMR   KNL
Sbjct:  187 IVDTAGRHKEESGLIEEMKQISEAIKPHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.078e-43
Identity = 93/232 (40.09%), Postives = 142/232 (61.21%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLV 690
            I+DTAGR + +K +++E+K +K + NP E++LV+D   GQ+A      F   +G  G+I+ TKLDG ++GG ALS    +  PIK +G GE ++DLEPF P +   R+LGMGD+ S +EKA++ M  E  EE    IM   F  N+ + Q   +  MGSM +++ MIPG G   P ++    E  +K  + +I +MT EERE P+++  S +R  R+A+ SG TE  V +++
Sbjct:  186 IIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 414          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_BUCBP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ffh PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.137e-43
Identity = 92/245 (37.55%), Postives = 152/245 (62.04%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            ++DTAGRLQIDK MM+EL DV  + +P E   V DAM GQ++  ++  FN  + ++  I+TK D D+R G  LS+K ++ KPIK +G GE++E+LE FYPDR+A RILGMGD+LS +E  +  + ++  ++    I   N F+FND L     + ++G ++ ++G +P    I  +     ++++ + M+ +I +MT  ER +PEL+  S  R++R++  SG     ++QL+ Q   ++  MK +
Sbjct:  188 LIDTAGRLQIDKKMMNELLDVYNISHPIETFFVADAMFGQDSINVINEFNKYLPVSSFIITKTDSDTRAGIILSIKYLTKKPIKFIGTGEKLEELELFYPDRIASRILGMGDMLSLIENIENKIDKKHIKKFSNTIKKYNTFNFNDMLLHINQIKKIGGVNSILGKLPKTQTIFNSFQNNIDENILLKMKTIINSMTISERHQPELIKGS--RKRRISLGSGIPIPEINQLLKQFNNIKKIMKTI 430          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_HAEIN5.158e-5445.71Signal recognition particle protein OS=Haemophilus... [more]
SRP54_MYCMY1.113e-4835.94Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_MYCGE1.454e-4837.55Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_MYCPN2.742e-4736.76Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_BUCAI5.716e-4539.43Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_THEON2.172e-4440.00Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_PYRKO2.837e-4439.18Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_THEGJ4.839e-4439.18Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_METJA1.078e-4340.09Signal recognition 54 kDa protein OS=Methanocaldoc... [more]
SRP54_BUCBP3.137e-4337.55Signal recognition particle protein OS=Buchnera ap... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.