GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.916e-42
Identity = 91/243 (37.45%), Postives = 143/243 (58.85%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            I DTAGR + +K ++ E++++  ++ P E +LV+D   GQ+A      F     I   I+TKLDG ++GG ALS     G PIK +G GER++DLE F P+R   R+LGMGD+ S +EK +EV ++E AEE    I+S  F   D   Q   + +MG + +V+ M+PG GK+     R  E++++    ++++MT EE EKP+++  S +R  R+A+ SG   + V +L+      +  MK L
Sbjct:  184 IFDTAGRHKEEKDLLREMEELSAIVEPHEAILVIDGTIGQQAREQALAFRKATDIGSIIVTKLDGSAKGGGALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLLGMGDLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIR--RIARGSGTRNEDVKELLKYYRVTKKAMKGL 424          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.726e-42
Identity = 93/245 (37.96%), Postives = 148/245 (60.41%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGR + DKA+++E+K +  V++P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GE+++D+EPF P R   R+LG+GD+   +EK +E+ ++ E  EE  ++ +   F   D   Q   + +MG + +++ MIPG+G   P  V    E+ LK  + ++++MT EE   PE++  S  R KR+A+ SG + + V +L+ Q  QM+   K++
Sbjct:  187 IVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINYS--RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.009e-41
Identity = 93/257 (36.19%), Postives = 151/257 (58.75%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL 765
            I+DTAGR + ++++++E+K +K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   R+LGMGD+ S +EK ++VM  E  EE    I+   F   +   Q  T+++MG M +++GMIPG G   P +  +  E+ LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  +  +  L+    +     KN  G ++ G +P +
Sbjct:  186 IIDTAGRHKEEESLLEEMKQMKEITNPNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLGMGDLDSLLEKTEDVM-DESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQDEIKDLL----KYYATTKNAFGNLKRGKMPKM 435          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.721e-41
Identity = 91/254 (35.83%), Postives = 151/254 (59.45%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSL 756
            I+DTAGR + +  +++E+K++K   NP E++LV+D   GQ+A      F   +   G+IL TK+DG ++GG ALS     G PIK +G GE+++DLEPF P +   R+LGMGD+ S +EK ++++  +D EE    +M   F  N+   Q   +++MGSM +++ MIPGMG   P    +  E  LK  + ++++MT  E+E P+++  S  R KR+A+ +G  ++ + +L+    +     KN    M+SG +
Sbjct:  186 IIDTAGRHKEESGLLEEMKEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGDLDSLLEKTEDII-DDDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIKTS--RMKRIAKGAGVKQEEIKELL----KYYSTTKNAFQNMKSGKM 432          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.834e-41
Identity = 93/257 (36.19%), Postives = 151/257 (58.75%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL 765
            I+DTAGR + ++ ++ E++++K + NPTE++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILGMGD+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  ++ +  L+    +     KN  G ++ G +P +
Sbjct:  186 IIDTAGRHKEEEGLLAEMREMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKAS--RLQRIAKGAGVKQEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ffh PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.834e-41
Identity = 90/246 (36.59%), Postives = 150/246 (60.98%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            ++DTAGRL I+  MM+E+  ++ +  P E LL+VD+M GQ+A  +   F+  + I+G ++TK D D+R G ALS++ ++GKPIK +G GE++  LEPF+P+R+A RILGM  V+S ++  +E + Q   + + KK     +F+ NDFL Q + +  MG+++  I       KI      + E + +L  +EA+I +MT +ER  P ++  S  R++R+A  SG   Q V++L+     ++  MK +
Sbjct:  188 LIDTAGRLHINTEMMNEINTIQNISKPIETLLIVDSMMGQDAINIAKKFSASLSISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPFHPERIADRILGMNQVISLIKDIEEKVNQSQVKNLTKKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKF-SKNKILSNNPLLGENKNTLNRIEAIIYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLKNFDNIKKIMKKI 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.457e-40
Identity = 92/257 (35.80%), Postives = 150/257 (58.37%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL 765
            I+DTAGR + ++ ++ E+K++K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILG+GD+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  ++ +  L+    +     KN  G ++ G +P +
Sbjct:  186 IIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.903e-40
Identity = 93/257 (36.19%), Postives = 149/257 (57.98%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL 765
            I+DTAGR + ++ ++ E+K++K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILG GD+ S +EK +++M  E AEE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G   + +  L+    +     KN  G ++ G +P +
Sbjct:  186 IIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGDLDSLLEKTEDIM-DESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIARGAGVKPEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.485e-40
Identity = 92/257 (35.80%), Postives = 150/257 (58.37%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL 765
            I+DTAGR + +++++ E+K++K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILG+GD+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  +  +  L+    +     KN  G ++ G +P +
Sbjct:  186 IIDTAGRHKEEESLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTLEEKENPELIKTS--RLQRIAKGAGVKQDEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.233e-39
Identity = 89/251 (35.46%), Postives = 146/251 (58.17%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735
            I+DT+GR  +D  + DE++ +K  + P EVL+++DA  GQ+A      FN  IG+TG I+TK+DG ++GG ALS       PI  +G GE M+DLE F P +   R+LG+GD+ S  E  QE  + +E+A+E  +K+M+  F+  D        ++ G M +++       IPG  KI  ++++ AE  L++   ++++MT EE E PE++  +  R  R+A+ +G  E+ V  L+ +   M+  MK + G
Sbjct:  182 IIDTSGRDSMDAELFDEIRRIKEAVAPDEVLMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDSMTFEELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKMMKG 430          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_METTH5.916e-4237.45Signal recognition 54 kDa protein OS=Methanobacter... [more]
SRP54_PYRFU7.726e-4237.96Signal recognition 54 kDa protein OS=Pyrococcus fu... [more]
SRP54_METVS1.009e-4136.19Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_META31.721e-4135.83Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM73.834e-4136.19Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_BUCAP3.834e-4136.59Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_METMP1.457e-4035.80Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM61.903e-4036.19Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM52.485e-4035.80Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_THEAC1.233e-3935.46Signal recognition 54 kDa protein OS=Thermoplasma ... [more]

Pages

back to top
Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.