GO241902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 2.104e-39 Identity = 94/255 (36.86%), Postives = 146/255 (57.25%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSL 756 IVDTAGR ++ ++ E+KD+ + LLV+DA GQ+A+ FN IGITG ++TKLDG ++GG ALS + I +G GE +D+E F PD R+LGMGD+ + VE+A EV+Q++D +K+M F ND Q + +MG + +++ M+P G+ G IT + + LK + ++++MT ER+ P+L+ S R RVA SGK+ + V +L+ M+ MK + G G + Sbjct: 182 IVDTAGRHALETDLIQEMKDIYGLTKFDHKLLVLDAAIGQQASEQARAFNDAIGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAAERDDPKLIGSS--RIARVAHGSGKSPEEVRELLKYHKMMQKAMKGMKGGGPGGKM 432
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 4.687e-39 Identity = 90/248 (36.29%), Postives = 140/248 (56.45%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735 IVDTAGR ++ ++DE++ + + P LLV+D GQ+A+ FN +GI+G +++KLDG ++GG ALS + I +G GE +DLE F PDR R+LGMGD+ S +EKA+E + +ED + + +M F D Q + +MG M +++ M+P GMG K++ + E +K ++++MT EE P LL S R KR++ SG + V +L+ M+ MK L G Sbjct: 182 IVDTAGRHSLEADLIDEMEQIHEIAQPDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGDIKSLIEKAEETLSEEDID--MEAMMRGRFTLKDMYSQLEAMNKMGPMKQIMQMLPLGGMGAKLSDDAYKVTEDKMKGYRVLMDSMTEEELLNPRLLGSS--RIKRISLGSGSSPDAVRELLKYYKMMQNAMKGLRG 425
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.781e-38 Identity = 84/231 (36.36%), Postives = 138/231 (59.74%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLV 690 +VDTAGR + +K ++DE+ ++ +++ P EV+LV+D GQ+A + TF I I++KLDG ++GG ALS PIK +G GER++D E F P+R R+LGMGD+ + +EKA EV ++ +EM I+S F D Q + +MG + +++ +IPG+G PA + E+ L + + ++ +MT E E PE++ +S R R+++ +G T V L+ Sbjct: 185 LVDTAGRHKEEKDLLDEMAELSQIVQPDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKLDGSAKGGGALSAVAEIRAPIKFIGTGERVDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPANASKVTEEKLGMYKILMNSMTTYELENPEVIKKS--RINRISRGAGLTNDDVKDLL 413
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.781e-38 Identity = 91/259 (35.14%), Postives = 159/259 (61.39%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL 765 IVDTAGR ++ + ++DEL+++ + P EVLLV+DA GQ+A F+ + +TG ++TKLD ++GG ALS +G PIK VG GER++DLE F P R+LG+GD+ + + +E++++E+ E ++ F D +Q +++MG + +++ +PGMG VR+ E+ LK + ++++MT +E E PE+L +S +R R+A SG +E+ V +L+ ++M MK+++ ++SG +P + Sbjct: 186 IVDTAGRDRLSEDLIDELREMAERIEPHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGDIDELLRRTEEMLEEEEKAE---DVLEGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMG--GGRNVRKISQITEERLKKYKVIMDSMTEKELENPEILNKSRIR--RIAIGSGTSERDVIELLNH-YRM---MKDVIEDIQSGRIPRI 433
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 2.326e-38 Identity = 87/245 (35.51%), Postives = 145/245 (59.18%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729 IVDTAGR + +K +++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q + +MG + +++ MIPG+G P +V E+ L+ + ++++MT EE P+++ S R KR+A+ SG + + V +L+ Q QM+ K++ Sbjct: 187 IVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3) HSP 1 Score: 158.688 bits (400), Expect = 5.182e-38 Identity = 87/245 (35.51%), Postives = 144/245 (58.78%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729 IVDTAGR + +K +++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE + + F D Q + +MG + +++ MIPG+G P + + E+ L+ + ++++MT EE PE++ S R KR+A+ SG + + V +L+ Q QM+ K++ Sbjct: 187 IVDTAGRHKEEKDLIEEMRMISEEIRPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVIMDSMTEEELMNPEIINYS--RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 6.768e-38 Identity = 84/244 (34.43%), Postives = 139/244 (56.97%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729 I DTAGR + ++ ++ E+ + ++ PTE +LV+D GQ+A F+ + I+TKLDG ++GG A+S +G PIK +G GER++D E F P R R+LGMGD+ + +EKA++ + ++ AE+ K +MS F D Q + MG M +V+ MIPG+G K++ + E + + ++ +MT +E E P+L+ +S +R R+A +G E V L+ + MK + Sbjct: 184 IFDTAGRHKQEEDLIAEMDTLDDIIQPTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDIQTLIEKAEDSIDEDMAEKTMKNMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMIPGLGNKVSKEASKMTEDKIDGYKVIMSSMTKKEMENPKLIKQSRIR--RIAMGAGVEESEVRDLLKYYNNTKKTMKGI 425
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METTP (Signal recognition 54 kDa protein OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 8.840e-38 Identity = 90/250 (36.00%), Postives = 144/250 (57.60%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVM 741 IVDTAGR ++ ++ E+KD+ V+N LLV+DA GQ+A+ FN +GITG I+TKLDG ++GG ALS + + +G GE DLE F DR R+LGMGD+ +EKAQEV + D + +M F D KQ + +MG + +++ M+P G+G +++ + + ++ L+ ++++MT EE E P+++ S R KR+A+ SG + V +L+ M+ +K + G M Sbjct: 182 IVDTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDIKGLIEKAQEVQIESDVD--VDAMMKGKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGIGIELSDKEYQVTKERLEAYRFIMDSMTDEELEDPKIINAS--RIKRIARGSGTRPELVKELLKSHAAMQKAIKGMRGGM 427
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.154e-37 Identity = 88/251 (35.06%), Postives = 141/251 (56.18%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735 IVDTAGR ++ +++E++ + V P +V+DA GQ+A+ FN +GITG I+TKLDG ++GG ALS + PI +G GE ED E F DR R+LGMGD+ S +EKA+E + +ED + +M F D KQ + +MG + +++ M+P GMG K++ + +K + ++++MT EE P+L+ S R KR+++ SG + + V +L+ M+ +K G Sbjct: 182 IVDTAGRHALEADLIEEMEQINAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEETLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPLGMGGMGGVKLSDEMFQATSDKMKNYKTIMDSMTEEEMTDPKLIGGS--RIKRISRGSGCSPEEVRELLKYHKTMQTALKGFRG 428
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 9.773e-37 Identity = 87/248 (35.08%), Postives = 139/248 (56.05%), Query Frame = 1 Query: 1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG--KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735 IVDTAGR ++ +++E++ + V P +V+DA GQ+A+ FN +GITG I+TKLDG ++GG ALS + PI +G GE ED E F DR R+LGMGD+ S +EKA+E + +ED + +M F D KQ + +MG + +++ M+P GMG K + + +K + ++++MT EE P ++ S R KR+++ SG + + V +L+ M+ +K G Sbjct: 182 IVDTAGRHALEADLIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEESLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGGMKFSDEMFQATSDKMKNYKVIMDSMTEEEMTDPRVIGGS--RIKRISKGSGCSSEDVRELLKYHKTMQTALKGFRG 425 The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
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