GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METMA (Signal recognition 54 kDa protein OS=Methanosarcina mazei GN=srp54 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.276e-36
Identity = 87/251 (34.66%), Postives = 141/251 (56.18%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735
            IVDTAGR  ++  +++E++ +  V  P    +V+DA  GQ+A+     FN  +GITG I+TKLDG ++GG ALS    +  PI  +G GE  ED E F  DR   R+LGMGD+ S +EKA+E + +ED     + +M   F   D  KQ   + +MG + +++ M+P GMG     K++    +     +K  + ++++MT +E   P+L+  S  R KR+++ SG + + V +L+     M+  +K   G
Sbjct:  182 IVDTAGRHALEADLIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEESLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGGLGGVKLSDEMFQATSDKMKNYKVIMDSMTEDEMADPKLIGGS--RIKRISRGSGCSPEDVRELLKYHKTMQTALKGFRG 428          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.177e-36
Identity = 87/245 (35.51%), Postives = 147/245 (60.00%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            I+DTAGR + ++A++ E+K +   +NP EV+LVVDA  G+ AA     F   + I   I+TK+D  +RGG AL+    +G  +K +G GE +E+LEPF P +   R+LGMGD+ + +EK + V ++   EE+ ++I S   D   F KQ  ++ ++G +S+V  ++PG    KI+  Q+  ++K+LK   A++ +MT EE + P++L  S +R  R+A  +G T + V +++     ++   K L
Sbjct:  184 IIDTAGRHRNEEALLQEVKAIYDAVNPDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFVARLLGMGDLDALLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLMKLGPLSKVFQLLPGGLAAKISEEQIELSQKNLKKWRAILSSMTMEELKNPDILNASRIR--RIALGAGVTPKDVKEMLTVYENLKKMSKTL 423          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.844e-36
Identity = 89/246 (36.18%), Postives = 134/246 (54.47%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735
            IVDTAGR  ++  ++DE+  V   LNP    LV+DA  GQ A      F+  IGI G I+TK+DG ++GG A+S    +   I  +G GE ++DLE F P+    R+LGMGD+ + VEKA+E M  ED +     ++   F  ND  KQ   V +MG + +V+ M+P      P+   E     +K    ++++MTP+E ++P L+  S  R  RVA+ SG + + V  L+     M+  +K   G
Sbjct:  182 IVDTAGRHALEDDLIDEITQVNAYLNPDHRWLVIDAALGQAARDQAKRFHEAIGIDGVIVTKMDGTAKGGGAMSAVAETQSGIVFIGNGETIDDLERFDPNGFISRLLGMGDLKALVEKAEESMNAEDVD--VNAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLPMGNMNVPSDALEGTADKMKKFRIIMDSMTPQELDEPALINTS--RMIRVAKGSGSSVEEVRDLIKYYKMMQKTLKGFRG 423          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.850e-36
Identity = 89/261 (34.10%), Postives = 152/261 (58.24%), Query Frame = 1
Query:    1 IVDTAGRLQIDKA--MMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQ------LFQMRVRMKNLMGVME 744
            IVDTAGR    +   +++E+K++   + P EV+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F P R   RILGMGD+ S +EK + + + E  ++  +++MS  A     D  KQ   + +MG +++++ M+PG G   +I   Q++  E+ +K    ++ +MT +E + P ++ +S +R  R+A+ SG + + V +L+ Q      L +M  R K L  + E
Sbjct:  182 IVDTAGRHGYGEEVKLLEEMKNMYSEIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAAIKFIGTGEKLDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYKELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGLAKLFE 440          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HALVO (Signal recognition 54 kDa protein OS=Halobacterium volcanii GN=srp54 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.850e-36
Identity = 87/268 (32.46%), Postives = 146/268 (54.48%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ---KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALSNLED 780
            IVDTAGR  ++  ++DE+++++ V+ P   LLV+DA  GQ A      F+  IGI G ++TKLDG ++GG AL+    +   I  +G GE ++D+E F P+    R+LGMGD+    E+ +  M +  AE+     +++M  NF   D  KQ   + +MG + +V+ MIPG G     Q+ +      +  ++  E ++++MT EE E P  +  S VR  R+AQ SG+ E+ + +L+ Q   M   +K    + +      +  L++
Sbjct:  182 IVDTAGRHALEDDLIDEIEEIEGVVQPDLNLLVLDAAIGQGAKEQAQQFDESIGIGGVVITKLDGTAKGGGALTAVNETDSSIAFLGMGETVQDIERFEPNGFISRLLGMGDLKQLSERVERAMSETQAEDEDWDPEEMMKGNFTLKDMQKQMEAMDKMGPLDQVLDMIPGFGGGIKDQLPDDAMDVTKDRMRSFEVIMDSMTEEELENPRKVGASRVR--RIAQGSGQDEETIQELLEQHRMMEQTIKQFQNMGDGDMQRMMKKLQN 447          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HALMA (Signal recognition 54 kDa protein OS=Haloarcula marismortui GN=srp54 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.850e-36
Identity = 85/255 (33.33%), Postives = 146/255 (57.25%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQ-KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGV 738
            IVDTAGR  +++ ++++++ +++ + P   LLV+DA  GQ A +    F   IGI G ++TKLDG ++GG AL+    +   I  +G GE ++D+E F P     R+LGMGD+      VE+A E  Q+ D E+   + ++   F   D  KQ +T+  MG + +V+ MIPG+G     ++    +   ++ ++  + ++++MT EE E P ++ +S  R KR+ + SGK E+ V +L+ Q  QM   +K   G+
Sbjct:  182 IVDTAGRDGLNEELIEQIERIEQEVQPDRDLLVLDAAMGQSAKSQAADFEAAIGIDGVVITKLDGTAKGGGALAAVNETDSTIAFLGSGETVKDIERFEPSGFISRLLGMGDLKQLTERVERAMEETQEGDEEDWDPEDMLEGQFTLKDMRKQMQTMNNMGPLDQVMDMIPGLGGGLMDQLPDDAMDVTQERMQDFDVIMDSMTEEELENPRVVGQS--RTKRICRGSGKPEERVRELLQQHKQMEQMLKQFQGM 434          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_THEVO (Signal recognition 54 kDa protein OS=Thermoplasma volcanium GN=srp54 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.335e-36
Identity = 82/251 (32.67%), Postives = 144/251 (57.37%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735
            I+DT+GR  +D  +++E++ +K  + P +VL+V+DA  GQ+A       N  +G+TG I+TK+DG ++GG ALS       PI  +G GE M+D+E F P +   R+LG+GD+ +  E  +E  + +E+A++  +K+M+  F+  D        +R G M +++       +PG  KI   Q+  AE+ L+    ++++MT +E E PE++  +  R  R+A+ +G  E+ V  L+ +   M+  MK + G
Sbjct:  182 IIDTSGRDSLDSDLIEEIRRIKEAVKPDQVLMVIDATMGQQAGPESKAINDAVGVTGIIITKMDGTAKGGGALSAVAKMRVPIYFIGTGEHMDDMEIFDPKKFLSRLLGLGDLETLFETVKEANITEEEAQKSFEKLMTGKFNLKDMYDVWEKFSRPGLMKKLVDSLPLAKLPGSQKINDDQILTAEQKLQRYRIIMDSMTFQELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKLMKG 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.081e-35
Identity = 86/245 (35.10%), Postives = 144/245 (58.78%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGR   ++ ++ E++++   + P EV+LV+DA  GQ+A  L   F+    I   I+TKLDG ++GG ALS   V+G  IK +G GE++++LE F P R   RILG+GD+   +EK + + + E  E+  ++ +S   +     KQ  ++ +MG + +++ MIPG+    P ++   +AE+ +K   A+I +MT EE +KPE++    +R  R+A  +G   + V +L+ Q   M+   K L
Sbjct:  184 IVDTAGRHHREEDLLREMREIAENIKPDEVVLVIDAAIGQQAHDLAKKFHEATPIGSIIVTKLDGTAKGGGALSAVAVTGATIKFIGTGEKIDELEVFRPPRFVARILGIGDLEGLIEKVRRI-KVEFTEKDVEEFLSGRLNMRLVYKQLVSLRKMGPLRKILQMIPGLSLKIPLEIEAGKAEEKIKKWLAIINSMTYEELDKPEIIDRRRIR--RIAYGAGVKPEDVRELLKQYEMMKKLSKQL 425          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_YEAST (Signal recognition particle subunit SRP54 OS=Saccharomyces cerevisiae GN=SRP54 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.411e-35
Identity = 92/267 (34.46%), Postives = 139/267 (52.06%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKS--LKIMEAMIEAMTPEEREKP-ELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGS------LPALSNL 774
            IVDT+GR   ++ +  E+ ++  V+ P + ++V+DA  GQ A      F         ILTK+DG +RGG A+S    +  PI  +G GE + DLE F P     ++LG+GD+ S  E+ Q V  +EDA+   + I    F   DF KQ +T+ +MG +S +  MIPGM  +   QV E E S  +K M  ++++MT EE E    +  E P R  RVA+ SG +   V  ++ Q  QM  RM       + G+      +P + N+
Sbjct:  196 IVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQMIPGMSNMM-NQVGEEETSQKMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGTSVFEVEMILMQQ-QMMARMAQTATQQQPGAPGANARMPGMPNM 460          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_THENV (Signal recognition 54 kDa protein OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=srp54 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.144e-35
Identity = 86/245 (35.10%), Postives = 145/245 (59.18%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGR + ++A++ E+K +   ++P EV+LV+DA  G+ AA     F   + I   I+TK+D  +RGG AL+    +G  +K +G GE +++LE F P +   R+LGMGD+ + VE+ + V ++   E++ ++I S   D   F KQ   + ++G +S+V  M+PG    KI+  Q+  ++K+LK   A++ +MT EE + PELL  S +R  R+A  +G T + V +++     ++   K L
Sbjct:  184 IVDTAGRHRNEEALLQEVKAIYEAVSPDEVVLVIDATVGKLAAAQAEAFMRYLPIHSVIITKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDELEMFIPRKFVARVLGMGDLDALVERIKAVFEE---EQVIQEIESGKLDLLTFKKQIDGLLKLGPLSKVFQMLPGGLAAKISEEQIELSQKNLKKWRAILSSMTVEELKNPELLNASRIR--RIALGAGVTPRDVKEMLTVYENLKRMSKTL 423          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_METMA1.276e-3634.66Signal recognition 54 kDa protein OS=Methanosarcin... [more]
SRP54_PYRAR2.177e-3635.51Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_METLZ2.844e-3636.18Signal recognition 54 kDa protein OS=Methanocorpus... [more]
SRP54_SULTO4.850e-3634.10Signal recognition 54 kDa protein OS=Sulfolobus to... [more]
SRP54_HALVO4.850e-3632.46Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_HALMA4.850e-3633.33Signal recognition 54 kDa protein OS=Haloarcula ma... [more]
SRP54_THEVO6.335e-3632.67Signal recognition 54 kDa protein OS=Thermoplasma ... [more]
SRP54_STAMF1.081e-3535.10Signal recognition 54 kDa protein OS=Staphylotherm... [more]
SRP54_YEAST1.411e-3534.46Signal recognition particle subunit SRP54 OS=Sacch... [more]
SRP54_THENV3.144e-3535.10Signal recognition 54 kDa protein OS=Thermoproteus... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.