GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HALLT (Signal recognition 54 kDa protein OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=srp54 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.144e-35
Identity = 85/256 (33.20%), Postives = 142/256 (55.47%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM---QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVME 744
            IVDTAGR  ++  ++ E+++++R ++P   LLV+DA  GQ A      F   IGI G ++TKLDG ++GG AL+    +   I  +G GE ++D+E F P     R+LGMGD+    E+ +  M   Q+ED +   + ++   F   D  +Q   + RMG + +V+ MIPGMG     ++    +   +  ++  E ++++MT EE E+P ++ +S  R +R+A+ SG  E+ V QL+ Q   M   +    G+ E
Sbjct:  182 IVDTAGRHALEDDLIAEIEEIERAVDPDRSLLVLDAAIGQGAKEQARQFEKSIGIEGVMITKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDIERFEPSGFISRLLGMGDLKQLSERVERAMAEAQEEDEDWDPEDMLQGEFTLKDMKRQMDAMNRMGPLDQVMDMIPGMGGGMMDQLPDDAMDVTQDRMRRFERIMDSMTDEELEQPRVVGQS--RTERIARGSGTDEETVRQLLEQHSMMEQTISQFQGMGE 435          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.363e-35
Identity = 84/250 (33.60%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 IVDTAGRLQIDKA--MMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGR    +   +++E+KD+   + P EV+LV+DA  GQ+A  L   F+    +   I+TK+DG ++GG ALS    +G PIK +G GE++++LE F P R   RILGMGD+ + +EK + +   E  ++   ++M+  +     D  KQ   V +MG +S+++ +IPG   MG I   QV+  E+ ++   +++ +MT +E + P ++ +   R +R+A  SG   + V +L+     ++  +K L
Sbjct:  183 IVDTAGRHGYGEEVKLLEEMKDIYEKIKPNEVILVIDASLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGALSAVAATGAPIKFIGVGEKIDELEVFNPRRFVARILGMGDLEAIIEKMKAMEDYEGIQKKMGEVMTGKSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNMMGDIPEDQVKVGEQKMQRWLSIMNSMTYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRELIEHFNTVQRTLKML 430          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_ARCFU (Signal recognition 54 kDa protein OS=Archaeoglobus fulgidus GN=srp54 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.363e-35
Identity = 87/255 (34.12%), Postives = 139/255 (54.51%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLP 759
            I+DTAGR  ++  ++DE+  +  V  P   LLV+DA  GQ A+     F+  IGI G I+TK DG ++GG ALS     G PI  +G GE++ED E F P     R+LGMGD+ + +EK + +  +E+ +   +  +   F   D  KQ   + +MG + ++  M+P G+G K+    +   ++ +K    ++++MT EE   P+++  S +R  R+A  SG + Q V +L+         MKNLM  M+   LP
Sbjct:  178 IIDTAGRHALEDELIDEMIKIAEVARPDYKLLVLDAAIGQLASKQAQAFHEAIGINGIIITKFDGTAKGGGALSAARQIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGDIKALMEKIERIASEEELD--PEAFLKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKIIDSSRIR--RIAIGSGTSPQEVKELL----NYYKTMKNLMKKMKKNKLP 424          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_NATPD (Signal recognition 54 kDa protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.004e-35
Identity = 84/253 (33.20%), Postives = 140/253 (55.34%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEE--MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGV 738
            IVDTAGR  +++A++DEL+ ++  ++P   LLV+DA  GQ A      F+  +GI G  +TKLDG ++GG AL+  + +   I  +G GE ++D+E F P     R+LGMGD+    E+ +  M++  AEE    + +M   F   D   Q   + +MG + +V+ MIPG+G     Q+ +      ++ L+  E ++++M+  E E P  + +S +  +R+A+ SG  E  V +L+ Q   M   MK   G+
Sbjct:  182 IVDTAGRHALEEALIDELEAIESAVDPDRNLLVLDAAIGQGAKDQAERFHDAVGIDGVAITKLDGTAKGGGALAAVDQTDSSIAFLGTGEEVKDIERFEPSGFISRLLGMGDLKQLSERVERAMEETQAEEDWDPEDLMKGEFTLKDMRNQMNAMNKMGPLDQVMDMIPGLGGGIKDQLPDDAMDMTQERLRDFEVIMDSMSEAELENPRAIGQSQI--ERIARGSGTDEDTVRELLEQHKMMSRMMKQFQGM 432          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_GEOCY (Signal recognition particle 54 kDa protein OS=Geodia cydonium GN=SRP54 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.004e-35
Identity = 89/308 (28.90%), Postives = 162/308 (52.60%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKP---ELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRV---RMKNLMGVMESGSLPALSNLEDALKSDRRLLLVPLGGRKDQNQGGSS-----LTRHQQGKSS 885
            IVDT+GR + ++++ +E+  V + ++P  ++ V+D   GQ   +    F  ++ +   I+TKLDG ++GG ALS    +  PI  +G GE ++++EPF       ++LGMGD+   +EK  ++   E+ EE+  K+    F   D  +Q + + +MG  +++IGMIPG     ++    RE+   LK +  M+++M   E + P   +L ++ P R  RVA+ SG + + V++L+ Q         +M  + G+ + G L    N     K ++++  + +  R  Q  GG S     + + QQG S+
Sbjct:  187 IVDTSGRHKQEESLFEEMLQVSQAIDPDNIIFVMDGTIGQACESQARAFKEKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKLLGMGDLEGLMEKVSDLKLDEN-EELMDKLKHGQFTLRDMYEQFQNIMKMGPFNQIIGMIPGFSPDFMSKGNERESMAKLKRLMTMMDSMNDGELDHPNGAKLFSKQPGRAARVARGSGTSVREVNELLKQYSNFSATVKKMGGIKGLFKGGDLGKNVNPSQMAKLNQQMAKM-MDPRVLQQMGGMSGLQNMMRQFQQGASN 492          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_AERPE (Signal recognition 54 kDa protein OS=Aeropyrum pernix GN=srp54 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.148e-35
Identity = 84/248 (33.87%), Postives = 139/248 (56.05%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            IVDTAGR     +  ++DE+K +   + P EV LV+DA  GQ+A  L   F+    I   I+TK+DG +RGG AL+   V+G  IK +G GE + +LEPF P R   RILGMGD+ S +E+ + + +  + +   + ++          +Q R + ++G + +V+ M+PG   +  I    ++  E+ +K   A+IE+MT EE ++PE++ +   R +R+A  SG +   V +L+     ++  MK L
Sbjct:  182 IVDTAGRHGHGEEARLLDEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTARGGGALTAAAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGDLESLLERIKSLEEAGELDRAAEDVLKGRITMRTIYRQLRAMRKLGPLGKVLQMLPGASMLASIDEGALKLGEEKMKRWMAIIESMTYEELDRPEIIDKR--RMRRIAIGSGTSVDDVRELLVYYKNLKTMMKKL 427          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HALSA (Signal recognition 54 kDa protein OS=Halobacterium salinarium GN=srp54 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.038e-34
Identity = 85/267 (31.84%), Postives = 144/267 (53.93%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALSNLE 777
            IVDTAGR  ++  ++ E+++++ V+ P   LLV+DA  GQ A      F+  IGI G  +TKLDG ++GG +L+    +   I  +G GE ++D+E F PD    R+LGMGD+      VE+A E  Q +D +   + +M   F  +D  KQ + +  MG + +V+ MIPGMG     ++    +   ++ ++  E ++++MT  E   P  +  S +R  R+A+ SG+ E  V +L+ Q   M   M+   G+ +      +S ++
Sbjct:  182 IVDTAGRHALEDDLIAEIEEIEGVVEPDRSLLVLDAAIGQGAKQQARQFDASIGIDGVAITKLDGTAKGGGSLTAVNETDSTIAFLGSGETVQDIERFEPDSFISRLLGMGDLKQLTERVERAMEETQDDDEDWDPEDLMKGEFTLHDMRKQMQAMDNMGPLDQVMDMIPGMGGGLMDELPDDAMDVTQERMRGFEVIMDSMTEAEMADPRSVGASQIR--RIARGSGQPEDRVRELLDQHKMMAQTMQQFQGMGDGDMQRMMSKMQ 446          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_HALS3 (Signal recognition 54 kDa protein OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.038e-34
Identity = 85/267 (31.84%), Postives = 144/267 (53.93%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPALSNLE 777
            IVDTAGR  ++  ++ E+++++ V+ P   LLV+DA  GQ A      F+  IGI G  +TKLDG ++GG +L+    +   I  +G GE ++D+E F PD    R+LGMGD+      VE+A E  Q +D +   + +M   F  +D  KQ + +  MG + +V+ MIPGMG     ++    +   ++ ++  E ++++MT  E   P  +  S +R  R+A+ SG+ E  V +L+ Q   M   M+   G+ +      +S ++
Sbjct:  182 IVDTAGRHALEDDLIAEIEEIEGVVEPDRSLLVLDAAIGQGAKQQARQFDASIGIDGVAITKLDGTAKGGGSLTAVNETDSTIAFLGSGETVQDIERFEPDSFISRLLGMGDLKQLTERVERAMEETQDDDEDWDPEDLMKGEFTLHDMRKQMQAMDNMGPLDQVMDMIPGMGGGLMDELPDDAMDVTQERMRGFEVIMDSMTEAEMADPRSVGASQIR--RIARGSGQPEDRVRELLDQHKMMAQTMQQFQGMGDGDMQRMMSKMQ 446          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_ACIAM (Signal recognition 54 kDa protein (Fragment) OS=Acidianus ambivalens GN=srp54 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.662e-34
Identity = 89/252 (35.32%), Postives = 146/252 (57.94%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM-----SANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVA--QLFQMRVRM 720
            IVDTAGR     + A+++E+K++   + P EV LV+DA  GQ+A  L + FN    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F P R   RILGMGD+ + +EK +EV   E+ ++MQKK+             D   Q   + +MG +S++  ++PG   +G+I   Q++  E+ ++   A++ +MT EE + P ++ +S  R +R+A  SG   + V +L+    L Q  ++M
Sbjct:  185 IVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGMGDIETILEKIKEV---ENYDKMQKKMEEVISGKGKLTLRDVYNQLIALRKMGPLSKLFQLLPGIGMLGQIPEDQLKVGEEKMRKWLAIMNSMTYEELDNPSIIDKS--RMRRIALGSGTEIEDVKELIEHYNLMQRTIKM 431          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.540e-34
Identity = 83/245 (33.88%), Postives = 145/245 (59.18%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            I+DTAGR + ++A++ E+K +   +NP EV+LV+DA  G+ AA     F   + I   I+TK+D  +RGG AL+    +G  +K +G GE +++ + F P +   R+LGMGD+ + VEK + V ++   E++ ++I S   D   F KQ   + ++G +S+V+ ++PG    KI+  QV  ++K+LK   A++ +MT EE + P++L  S +R  R+A  +G T + V +++     ++   K L
Sbjct:  184 IIDTAGRHKNEEALLQEVKMIYEAVNPDEVILVIDATVGKLAAAQAEAFMKYLPIHSVIITKMDSTARGGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMGDLDALVEKIKAVFEE---EKVLQEIESGRLDLLTFKKQIEGLLKLGPLSKVLQLLPGGFAAKISEEQVELSQKNLKKWYAILSSMTIEELKNPDILNASRIR--RIALGAGVTPKDVKEMLTVYENLKKMSKTL 423          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_HALLT3.144e-3533.20Signal recognition 54 kDa protein OS=Halorubrum la... [more]
SRP54_METS55.363e-3533.60Signal recognition 54 kDa protein OS=Metallosphaer... [more]
SRP54_ARCFU5.363e-3534.12Signal recognition 54 kDa protein OS=Archaeoglobus... [more]
SRP54_NATPD7.004e-3533.20Signal recognition 54 kDa protein OS=Natronomonas ... [more]
SRP54_GEOCY7.004e-3528.90Signal recognition particle 54 kDa protein OS=Geod... [more]
SRP54_AERPE9.148e-3533.87Signal recognition 54 kDa protein OS=Aeropyrum per... [more]
SRP54_HALSA2.038e-3431.84Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_HALS32.038e-3431.84Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_ACIAM2.662e-3435.32Signal recognition 54 kDa protein (Fragment) OS=Ac... [more]
SRP54_PYRIL4.540e-3433.88Signal recognition 54 kDa protein OS=Pyrobaculum i... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.