GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.843e-33
Identity = 77/260 (29.62%), Postives = 142/260 (54.62%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQHVSQLVAQ---LFQMRVRMKNLMGVMESGSL 756
            IVDT+GR + + ++ +E+  V   + P  ++ V+DA  GQ        F  ++ +   I+TKLDG ++GG ALS    +  PI  +G GE ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q     QM  +M  + G+ + G +
Sbjct:  188 IVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULIY (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.118e-32
Identity = 83/249 (33.33%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            IVDTAGR     +  +++E+K++   L P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + E  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+     M   +K
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULIN (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.118e-32
Identity = 83/249 (33.33%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            IVDTAGR     +  +++E+K++   L P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + E  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+     M   +K
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULIM (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.118e-32
Identity = 83/249 (33.33%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            IVDTAGR     +  +++E+K++   L P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + E  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+     M   +K
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULIL (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.118e-32
Identity = 83/249 (33.33%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            IVDTAGR     +  +++E+K++   L P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + E  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+     M   +K
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULIK (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.118e-32
Identity = 83/249 (33.33%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            IVDTAGR     +  +++E+K++   L P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + E  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+     M   +K
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULIA (Signal recognition 54 kDa protein OS=Sulfolobus islandicus (strain M.16.27) GN=srp54 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.118e-32
Identity = 83/249 (33.33%), Postives = 140/249 (56.22%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMK 723
            IVDTAGR     +  +++E+K++   L P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + E  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+     M   +K
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILEKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGVMLPTPSEDQLKLGEEKIRRWLAALNSMTYKELENPSIIDKS--RMRRIAEGSGLEVEDVRELLEWYNNMNKLLK 429          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SULSO (Signal recognition 54 kDa protein OS=Sulfolobus solfataricus GN=srp54 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.491e-32
Identity = 81/238 (34.03%), Postives = 138/238 (57.98%), Query Frame = 1
Query:    1 IVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLV 690
            IVDTAGR     +  +++E+K++  VL P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS    +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + +  ++  + +M         D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   + V +L+
Sbjct:  183 IVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKS--RMRRIAEGSGLEVEEVRELL 418          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.615e-31
Identity = 78/245 (31.84%), Postives = 142/245 (57.96%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNL 729
            I+DTAGR + ++ ++ E+K +   + P EV LV+DA  G+ AA     F   + I   I+TK+D  +RGG AL+    +G  +K +G GE +++ E F P +   R+LGMGD+ + VEK + V ++   +++ +++ S   D   F KQ  ++ ++G +S+V  ++P     K++  Q+  ++K+L+  +A++ +MT EE + PE+L  S +R  R+A  +G T + V +++     M+   K L
Sbjct:  183 IIDTAGRHRNEEELLKEVKAIYDAVKPDEVFLVIDATVGKLAAAQAEAFMKYLPIHSVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVDEFELFNPRKFVARVLGMGDLDALVEKIKAVFEE---DKVLEELESGRLDLLTFKKQIDSLLKLGPLSKVFQLLPSNFAIKVSEEQIELSQKNLRKWKAILSSMTMEELKHPEVLNASRIR--RIAMGAGVTPKDVKEMLTVFENMKKMSKML 422          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 6.136e-31
Identity = 84/285 (29.47%), Postives = 150/285 (52.63%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQ---LFQMRVRMKNLMGVMESGSLPALSNLEDALKSDRRL---LLVPLGG 825
            IVDT+GR + + ++ +E++ V     P  V+ V+D+  GQ A      F   + +   I+TK+DG ++GG ALS    +  P+  +G GE M++ E F       R+LGMGD   FV+K QEV+ ++   E+ +K+   NF       Q + +  MG +  V  M+PG+    +     +E++  +K    M+++MT +E +   P++  ES  R  R+A+ SG+  + V +++ +   L ++  +MK L  + ++G + ALS   +A    + L   +L  +GG
Sbjct:  188 IVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNES--RMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGG 469          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_BOVIN3.843e-3329.62Signal recognition particle 54 kDa protein OS=Bos ... [more]
SRP54_SULIY1.118e-3233.33Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIN1.118e-3233.33Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIM1.118e-3233.33Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIL1.118e-3233.33Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIK1.118e-3233.33Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULIA1.118e-3233.33Signal recognition 54 kDa protein OS=Sulfolobus is... [more]
SRP54_SULSO2.491e-3234.03Signal recognition 54 kDa protein OS=Sulfolobus so... [more]
SRP54_PYRCJ1.615e-3131.84Signal recognition 54 kDa protein OS=Pyrobaculum c... [more]
SR543_ARATH6.136e-3129.47Signal recognition particle 54 kDa protein 3 OS=Ar... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.