GO241902

Overview
NameGO241902
Unique NameGO241902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.785e-30
Identity = 86/285 (30.18%), Postives = 147/285 (51.58%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQ---LFQMRVRMKNLMGVMESGSLPALSNLEDALKSDRRL---LLVPLGG 825
            IVDT+GR + + A+ +E++ V     P  V+ V+D+  GQ A      F   + +   I+TK+DG ++GG ALS    +  P+  +G GE M++ E F       R+LGMGD   F++K  EV+  +   E+ +K+   +F      +Q + + +MG + +V  M+PG       + RE E   KI     M+++MT EE +   P+L+ +S  R  R+A+ SG+    V  ++ +   L ++  +MK L  + + G + ALS   +A    + L   +L  +GG
Sbjct:  188 IVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDS--RIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLK-IPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGG 469          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_SCHPO (Signal recognition particle 54 kDa protein homolog OS=Schizosaccharomyces pombe GN=srp54 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.784e-30
Identity = 88/286 (30.77%), Postives = 139/286 (48.60%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELL-AESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGVMESGSLPAL-SNLEDALKSDRRLLLVPLGGRKDQNQGG 849
            IVDT+GR Q ++ +  E+ ++   + P + ++++DA  GQ A +    F         I+TKLDG ++GG ALS    +  PI  +G GE + DLE F P     ++LG+GD+   +E  Q +    D + M K +    F   DF  Q   + ++G +S++  MIPGM   +      E    +K M  ++++MT +E +   LL  E P R  RVA+ SG +   V + ++Q+       K + G  + G L  L  N   ALK D R L       +    GG
Sbjct:  188 IVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEETISQVRVFAQMAKKIGG--KDGILGKLGGNPAAALKKDPRQLAAMQKRMQAMGMGG 469          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.578e-29
Identity = 86/285 (30.18%), Postives = 147/285 (51.58%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQ---LFQMRVRMKNLMGVMESGSLPALSNLEDALKSDRRL---LLVPLGG 825
            IVDT+GR + + A+ +E++ V     P  V+ V+D+  GQ A      F   + +   I+TK+DG ++GG ALS    +  P+  +G GE M++ E F       R+LGMGD+   V K Q+V+  +   E+ +K+   +F      +Q +++ +MG +  V  M+PG       Q RE E   K      M+++MT EE +   P++L ES  R  R+A+ SG+    V +++ +   L ++  +MK L  + + G + +LS   +A    + L   +L  +GG
Sbjct:  189 IVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTES--RIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGLK-IPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGG 469          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_DICDI (Signal recognition particle 54 kDa protein OS=Dictyostelium discoideum GN=srp54 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.397e-29
Identity = 71/235 (30.21%), Postives = 125/235 (53.19%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR---VAQDSGKTEQHVSQLVAQ 696
            IVDT+GR + D  + +E+K ++  + P   + V+D+  GQ A    T F   + +   I+TK+DG+S GG A+S    +  PI  +G GE + DLE F P     ++LG GD+   +EK +EV+ ++      K+I    F      +Q + + ++G + +++ MIPGM ++   Q  E    LK    ++++++     + EL  + P+ +KR   +AQ SG+    V +L+ Q
Sbjct:  188 IVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSIGQAAYEQATAFRSSVKVGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKLLGYGDMKGMLEKIKEVIPEDSTS--LKEIAQGKFTLRSMQQQFQQIMQLGPIDKLVQMIPGMNQLPQLQGNEGGLKLKAYINILDSLS-----EKELDGKKPITQKRIITIAQGSGRHPNEVVELLEQ 415          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.397e-29
Identity = 79/284 (27.82%), Postives = 147/284 (51.76%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITP-AQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMGV--MESGSLPALSNLEDALKSDRRL---LLVPLGG 825
            IVDT+GR +   ++ +E++ +     P  V+ V+D+  GQ A      F   + +   I+TK+DG ++GG  LS    +  P+  +G GE M++ E F       R+LG GD+  FV K QEV+ ++   E+ + +    F       Q + +  MG +  V  M+PGM  ++ P    +E++  +K    M+++MT EE +   P++  ES  R  R+A+ SG+  + V +++ +  ++      + G+  +E G++ ALS  +++ +  + L   +L  +GG
Sbjct:  188 IVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNES--RIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGG 469          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_ASPNG (Signal recognition particle 54 kDa protein homolog OS=Aspergillus niger GN=srpA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.796e-29
Identity = 79/249 (31.73%), Postives = 130/249 (52.21%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQE-DAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI--MEAMIEAMTPEERE-KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLMG 735
            IVDT+GR + ++ +  E+  ++  + P + +LV+D+  GQ A    + F         I+TK DG + GG A+S    +  PI  +G GE + DLE F P     ++LGMGD+   VE  Q V +    A+E  K I    +   DF +   ++ +MG +S++ GMIPG+  +T A + + + S+K+  M  + ++MT  E +   ++  E P R  R+A  SG T + V  L++Q   M    K + G
Sbjct:  189 IVDTSGRHKQEEELFTEMTQIQTAVTPDQTILVLDSTIGQAAEAQSSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGMGDMAGLVEHVQAVTKDSASAKETYKHISEGIYTLRDFRENITSIMKMGPLSKLSGMIPGLSNLT-AGLDDEDGSMKLRRMIYIFDSMTAAELDGDGKMFVEQPSRMVRIACGSGTTVREVEDLLSQHRMMAGMAKRVGG 436          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.182e-28
Identity = 89/306 (29.08%), Postives = 152/306 (49.67%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAM--IEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQ---LFQMRVRMKNLMGVMESGSLPALS---NLEDALKSDRRLLLVPLGGRKDQNQGGSSLTRHQQGKSSS 888
            I+DT+GR + + A+ +E++ V     P  V+ V+D   GQ A      F     +   I+TKLDG ++GG ALS    +  P+  +G GE +++ E F       R+LGMGD+   ++K Q+VM  +   E+  K+    F      +Q + + +MG + +V  M+PG       +  E E   KI   M  +++MT  E +   P+L+ ES  R  R+A+ SG+  + V+ ++ +   L +M  +MK L  + ++G +  LS   N++   K+    +L  +GG      G  +L +   GK  S
Sbjct:  188 IIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDLSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTES--RIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLK-MPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGM----GGLQALMKQMGGKDMS 486          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.182e-28
Identity = 89/306 (29.08%), Postives = 152/306 (49.67%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAM--IEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQ---LFQMRVRMKNLMGVMESGSLPALS---NLEDALKSDRRLLLVPLGGRKDQNQGGSSLTRHQQGKSSS 888
            I+DT+GR + + A+ +E++ V     P  V+ V+D   GQ A      F     +   I+TKLDG ++GG ALS    +  P+  +G GE +++ E F       R+LGMGD+   ++K Q+VM  +   E+  K+    F      +Q + + +MG + +V  M+PG       +  E E   KI   M  +++MT  E +   P+L+ ES  R  R+A+ SG+  + V+ ++ +   L +M  +MK L  + ++G +  LS   N++   K+    +L  +GG      G  +L +   GK  S
Sbjct:  188 IIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDLSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTES--RIIRIARGSGRQIRDVTDMLEEYKRLAKMWSKMKGLK-MPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGM----GGLQALMKQMGGKDMS 486          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SRP54_CANAL (Signal recognition particle 54 kDa protein homolog OS=Candida albicans GN=SRP54 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.862e-28
Identity = 77/249 (30.92%), Postives = 123/249 (49.40%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ--KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV--REAEKSLKIMEAMIEAMTPEERE-KPELLAESPVRRKRVAQDSGKTEQHVSQLVAQLFQMRVRMKNLM 732
            IVDT+GR + ++ +  E+  +   + PT+ ++V+D   GQ A +    F         ILTK+DG ++GG A+S    +  PI  +G GE + DLE F P     ++LG+GD+   +E  Q +   +D    Q  + I    F   DF  Q     +MG ++ +  MIPG+  I  +QV   E  K +K M  ++++MT +E E    +  + P R  RVA+ SG     V  ++ Q   M    K+ M
Sbjct:  205 IVDTSGRHRQEEQLFTEMVQIGEAVQPTQTIMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQMNNFLKMGPLTNIASMIPGLSNIM-SQVGDEETSKKIKNMIYIMDSMTTKELECDGRIFIKEPSRIVRVARGSGCAVVEVEMILQQHRMMSTMAKSAM 452          
BLAST of GO241902 vs. ExPASy Swiss-Prot
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.350e-28
Identity = 82/305 (26.89%), Postives = 150/305 (49.18%), Query Frame = 1
Query:    1 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAATLVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGK-------------------TEQHVSQLVAQLFQMRVR-MKNLMGVMESGSLPALSNLEDALKSDRRLLLVPLGGRKDQNQ 843
            I+DT+GR   + A+ +E++ V     P  V+ V+D   GQ A      F     +   I+TKLDG ++GG ALS    +  P+  +G GE ++D + F  +    R+LG GD+   ++K + ++  +   E+  K+    F      +Q + + +MG MS++  M+PG     +   Q +++++  K    ++++MTP E +   P+L+ ES  R  RVA+ SG+                   ++++VS+L+ Q  +M  + ++ ++ VM    +  +       KS    LL  LGG KD ++
Sbjct:  187 IIDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLLGRGDLPGLIDKMESIVPADQQSELVAKLSEGAFTLRLLYEQFQNLLKMGPMSQIFSMLPGFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTES--RIIRVARGSGRKVKDVMEMLEEYKRLAKMWSKRNVSKLIPQNGKMSAQAIQKMLKVMPPQVVQQMGG-----KSGLEALLKQLGGGKDTSK 484          
The following BLAST results are available for this feature:
BLAST of GO241902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SR542_SOLLC1.785e-3030.18Signal recognition particle 54 kDa protein 2 OS=So... [more]
SRP54_SCHPO6.784e-3030.77Signal recognition particle 54 kDa protein homolog... [more]
SR541_SOLLC2.578e-2930.18Signal recognition particle 54 kDa protein 1 OS=So... [more]
SRP54_DICDI4.397e-2930.21Signal recognition particle 54 kDa protein OS=Dict... [more]
SR542_ARATH4.397e-2927.82Signal recognition particle 54 kDa protein 2 OS=Ar... [more]
SRP54_ASPNG9.796e-2931.73Signal recognition particle 54 kDa protein homolog... [more]
SR542_HORVU2.182e-2829.08Signal recognition particle 54 kDa protein 2 OS=Ho... [more]
SR541_HORVU2.182e-2829.08Signal recognition particle 54 kDa protein 1 OS=Ho... [more]
SRP54_CANAL4.862e-2830.92Signal recognition particle 54 kDa protein homolog... [more]
SR543_HORVU6.350e-2826.89Signal recognition particle 54 kDa protein 3 OS=Ho... [more]

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Properties
Property NameValue
Genbank description550 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 690 5, mRNA sequence.