GO241899

Overview
NameGO241899
Unique NameGO241899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.874e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:  122 GCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:  131 GCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:  122 GCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:  122 GCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.197e-14
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG
Sbjct:  133 GCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
The following BLAST results are available for this feature:
BLAST of GO241899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBS2B_ARATH1.099e-1478.26Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1B_ARATH1.099e-1478.26Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_RAPSA1.874e-1476.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA1.874e-1476.09Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA1.874e-1476.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ2.448e-1478.72Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_SOYBN2.448e-1474.47Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_ORYSJ2.448e-1478.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.448e-1478.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_PETHY3.197e-1474.47Ribulose bisphosphate carboxylase small chain SSU1... [more]

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Properties
Property NameValue
Genbank description547 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 685 5, mRNA sequence.