GO241899

Overview
NameGO241899
Unique NameGO241899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:  126 GCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:  131 GCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:  134 GCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP G
Sbjct:  135 GCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SFIA+KP G
Sbjct:  126 GCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
The following BLAST results are available for this feature:
BLAST of GO241899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBS3_FLAPR9.303e-1470.21Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_SOLLC9.303e-1476.60Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC9.303e-1476.60Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2_FLAPR9.303e-1470.21Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2A_SOLLC9.303e-1476.60Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS1_SOLLC9.303e-1476.60Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_AMAHP9.303e-1472.34Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC1.215e-1374.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO1.215e-1373.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR1.215e-1368.09Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank description547 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 685 5, mRNA sequence.