GO241899

Overview
NameGO241899
Unique NameGO241899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 138
            GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:  131 GCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  134 GCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  134 GCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  134 GCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  133 GCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:  126 GCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:  132 GCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of GO241899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBSC_SOLTU1.215e-1374.47Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU1.215e-1374.47Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU1.215e-1374.47Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS4_SOYBN1.215e-1373.91Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_SOLTU1.215e-1374.47Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_NICSY1.215e-1374.47Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS1_SOLTU1.215e-1374.47Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_NICSY1.215e-1374.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FLAPR1.215e-1370.21Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_LEMGI1.587e-1377.78Ribulose bisphosphate carboxylase small chain SSU5... [more]

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Properties
Property NameValue
Genbank description547 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 685 5, mRNA sequence.