GO241899

Overview
NameGO241899
Unique NameGO241899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:  131 GCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SFIA KP G
Sbjct:  133 GCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP
Sbjct:  136 GCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:  134 GCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:  134 GCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:  134 GCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  134 GCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.291e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P
Sbjct:  131 GTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISF+  KP G
Sbjct:  131 GCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISFI  KP
Sbjct:  142 GCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
The following BLAST results are available for this feature:
BLAST of GO241899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBS_HELAN4.617e-1365.96Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL4.617e-1368.09Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_AMAHP4.617e-1373.33Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_FRIAG6.030e-1368.89Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG6.030e-1368.89Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_FRIAG1.343e-1266.67Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS0_SOLTU1.343e-1270.21Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_TRIRP2.291e-1273.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE2.993e-1270.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA2.993e-1268.89Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank description547 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 685 5, mRNA sequence.