GO241899

Overview
NameGO241899
Unique NameGO241899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISFIA KP
Sbjct:  133 GCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:  134 GCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SFIA KPPG
Sbjct:  122 GCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SFIA+KPPG
Sbjct:  122 GCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:  134 GCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:  133 GCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:  132 GCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:  137 GCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:  133 GCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:  134 GCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
The following BLAST results are available for this feature:
BLAST of GO241899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBS_STELP3.908e-1273.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FRIAG3.908e-1266.67Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_MAIZE5.105e-1265.96Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA6.667e-1268.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR6.667e-1268.89Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_MESCR6.667e-1268.89Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_SILPR8.707e-1273.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR8.707e-1266.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_MESCR8.707e-1266.67Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_MESCR8.707e-1266.67Ribulose bisphosphate carboxylase small chain 4, c... [more]

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Properties
Property NameValue
Genbank description547 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 685 5, mRNA sequence.