GO241899

Overview
NameGO241899
Unique NameGO241899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 141
            GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:  135 GCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISFI  KP
Sbjct:  126 GCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP
Sbjct:  131 GCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:  133 GATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISFIA  P
Sbjct:  133 GTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of GO241899 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 GCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 135
            G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISFIA  P
Sbjct:  133 GTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
The following BLAST results are available for this feature:
BLAST of GO241899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RBS_HEVBR1.137e-1168.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH1.485e-1166.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_MESCR1.485e-1168.89Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MEDSA1.940e-1168.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_PEA2.533e-1173.33Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA2.533e-1173.33Ribulose bisphosphate carboxylase small chain 3C, ... [more]

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Properties
Property NameValue
Genbank description547 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 685 5, mRNA sequence.