GO241870

Overview
NameGO241870
Unique NameGO241870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   13 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 279
            GY PV  CHT+  A     I  K+D +SG+  E+ P ++K GDA  V + PT+PM +E  SE P LGRFA+RDM  T+A G+  SV +K
Sbjct:  333 GYTPVFHCHTAQTACTLMAINKKLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    4 IGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 276
            I  GY PV   HT+ +A +  EI+  I+ + G  L+++P F+K GD   VK++P + +V+E  SE+P LGRFA+RDM  TVA G    ++K
Sbjct:  333 IAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   13 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 279
            GY PV   HT+ +A     I  K+D  SG+  E++P F+K+GDA  V + P KP+ +E  +E P LG FAVRDM QT+A G +  VD++
Sbjct:  333 GYTPVFHAHTAQVACTIESIDQKLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKVLEVDER 421          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 IGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 279
            I  GY PV   HT+ +A     I  KID  SG+  E+ P F++NGDA  V + P KP+ +E  SE P LG FA+RDM QT+A G +  V+++
Sbjct:  330 ITEGYTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   13 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 279
            GY PV   HT+ +A     I  KID  SG+  E+ P F+++GDA  V + P KP+ +E+ +E P LG FA+RDM QTVA G + SV+++
Sbjct:  334 GYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   13 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 276
            GY PV   HT+ +A     I  K+D  SG+  E+ P F+++GDA  V + P KP+ +E  SE P LG FAVRDM QT+A G +  VD+
Sbjct:  333 GYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   13 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 276
            GY PV   HT+ +A     I  K+D  SG+  E+ P F+++GDA  V + P KP+ +E  SE P LG FAVRDM QT+A G +  VD+
Sbjct:  333 GYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of GO241870 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 QIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 228
            +I  GY PV+DCHT+HIA +F   L K+D+R+ K   + P     GD   VKM+P KP+  ETF++Y PLG FAVR
Sbjct:  321 KIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
The following BLAST results are available for this feature:
BLAST of GO241870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_METBU2.575e-1747.19Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_PICTO2.847e-1642.86Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_HALWD4.857e-1644.94Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_HALMA6.343e-1644.57Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_NATPD1.082e-1544.94Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_HALSA4.111e-1545.45Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS34.111e-1545.45Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_GIALA1.196e-1450.00Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]

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Properties
Property NameValue
Genbank description518 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 655 5, mRNA sequence.