GO241848

Overview
NameGO241848
Unique NameGO241848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARLVE 226
            R L E++ + +   F +YIK GI AD+LE +YKK H  IR+DP + +  KK  + E KR+N KKLT  ERK R+VE
Sbjct:  209 RKLEEEDEDAFNRQFSQYIKLGIVADDLENMYKKAHENIRSDPKRDRKPKKDVSKEPKRWNAKKLTNAERKQRVVE 284          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 2
Query:    8 LMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVE 226
            L E+  E Y+  F  +IK GI ++N+EE+YKK HAAIRADP+ K   +K   + KR+N  K++Y +R+AR+ +
Sbjct:  219 LEEENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPSPKAKVEK-TVDKKRWNRAKISYAQRRARVAQ 290          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 229
            R LME++ + Y+  F +YIK G+ AD LE++YKK HA IR +P  +K  KK   + KR+N  KL+ E++K R+ ++
Sbjct:  209 RLLMEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKK-EVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 229
            R LME++ + Y+  F +YIK G+ AD +E+LYKK HA IR +P  +K  KK   + KR+N  KL+ E++K R+ ++
Sbjct:  209 RLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKK-EVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    5 TLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP-------PAEHKRYNLKKLTYEERKARLVERLKAL 241
            TL +D+ E+Y+S F  YI+  +EAD LE+LY + HAAIR DP +K   + P        AE  +Y   KLT E+R A + ER+ AL
Sbjct:  213 TLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN-QKKSEKKPPAEHKRYNLKKLTYEERKARLVE 226
            RTL E++ + Y+  F +YI  GI+AD++E +YK  HA IR DP   KK EKK     KR+NL KLT E RKA++ +
Sbjct:  209 RTLEEEDEDAYKRQFSKYIALGIKADDIETIYKNAHAGIRKDPAFHKKPEKK--VTKKRFNLAKLTLEARKAKIAK 282          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 2
Query:    5 TLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYN 181
            T+ E+EPEKYQ+HF  Y++  IE D +E++YK+VHA IR +P   K E+  PA+ KR++
Sbjct:  208 TMQEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWS 266          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 28/77 (36.36%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    8 LMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 238
            L E++ EKY++HF  +IK GI AD++E++Y+  HA IRA+P  +K + +     KR+N  K++ ++++ R+ ++  A
Sbjct:  211 LQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHEKKQPRDGLVKKRWNRAKMSLKQKRDRVKQKKAA 287          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    2 RTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 229
            + L E++ E ++  F +YIK G+ AD +EE+Y K HAAIR DP  KK +     + KR+N KK+T+ +R+ R+ ++
Sbjct:  209 KELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPKK-KTDFAGKTKRWNRKKMTFSQRRDRVKQK 283          
BLAST of GO241848 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    8 LMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKAL 241
            L E++ ++Y+  F +++  G+ ADNL   Y+K HA IRADP+   S KK     KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  210 LKEEDEDRYKRQFSKFLSNGMNADNLVATYQKAHANIRADPS--PSAKKAAKPSKRHTAKRLTYDERKQRVADK-KAL 284          
The following BLAST results are available for this feature:
BLAST of GO241848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL5_TOXCI2.141e-1248.6860S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_OIKDI2.797e-1245.2160S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5B_XENLA2.797e-1243.4260S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA3.652e-1243.4260S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_NEUCR8.137e-1244.1960S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_AEDAE8.137e-1248.6860S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_DUNSA1.063e-1149.1560S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_SUBDO5.274e-1136.3660S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_STYCL8.996e-1140.7960S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_CAEBR8.996e-1143.5960S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]

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Properties
Property NameValue
Genbank description496 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 633 5, mRNA sequence.