GO241787

Overview
NameGO241787
Unique NameGO241787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.008e-78
Identity = 142/190 (74.74%), Postives = 171/190 (90.00%), Query Frame = 3
Query:  240 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            D+KLF +W  E + ++DISL+DYI V+   +A Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+ + EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADELINAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.316e-78
Identity = 143/190 (75.26%), Postives = 169/190 (88.95%), Query Frame = 3
Query:  240 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            ++KLF RW  +D+ ++DISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVK A EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.482e-77
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 3
Query:  348 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVK AMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 286.189 bits (731), Expect = 1.609e-76
Identity = 141/198 (71.21%), Postives = 169/198 (85.35%), Query Frame = 3
Query:  216 QDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            ++  Q Q ++KLFN+W+FE+V+V D SL DY+ V   +   +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+K  ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct:   31 EEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.665e-73
Identity = 140/189 (74.07%), Postives = 164/189 (86.77%), Query Frame = 3
Query:  243 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            +KLFN++ FE V+V DISL DYI +    N   +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVK A EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIG---NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.665e-73
Identity = 140/189 (74.07%), Postives = 164/189 (86.77%), Query Frame = 3
Query:  243 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            +KLFN++ FE V+V DISL DYI +    N   +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVK A EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIG---NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.551e-70
Identity = 129/190 (67.89%), Postives = 160/190 (84.21%), Query Frame = 3
Query:  240 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            +V LF +W++  V   DISL DYI V   K   + PH+AGRY+  RFRKAQCPIVERL NS+MM GRN GKK+MAVRI+++A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADELINA+KGS NSY+IK+KD +ER AK++R
Sbjct:    4 EVALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.378e-50
Identity = 92/147 (62.59%), Postives = 123/147 (83.67%), Query Frame = 3
Query:  369 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            +K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE++NA+K  + S+AI KK+++ERVA +NR
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.677e-47
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  243 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K I ECLA+ELI AA+G   SYAI++K+EIER+A ++R
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
BLAST of GO241787 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.959e-46
Identity = 94/190 (49.47%), Postives = 134/190 (70.53%), Query Frame = 3
Query:  240 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKRAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 809
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++FRN  T+AE +A+ELI A+  S NSYA+ KK EIER+A++NR
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
The following BLAST results are available for this feature:
BLAST of GO241787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS5_PODCA1.008e-7874.7440S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5B_DROME1.316e-7875.2640S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_NICPL2.482e-7796.7540S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_YEAST1.609e-7671.2140S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5B_SCHPO1.665e-7374.0740S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.665e-7374.0740S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI8.551e-7067.8940S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.378e-5062.5940S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE2.677e-4750.7930S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU2.959e-4649.4740S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank description435 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 571 5, mRNA sequence.