GO241781

Overview
NameGO241781
Unique NameGO241781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.250e-38
Identity = 76/123 (61.79%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 369
            QI++LGTGKK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P DV  V+ T++RA+   GT
Sbjct:  431 QIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGT 553          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.691e-37
Identity = 74/123 (60.16%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 369
            QII+LGTGKK  EK L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT  + ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT
Sbjct:  425 QIILLGTGKKKFEKLLKSMEEKFPGKVRAVVRFNAPLAHQMMAGADLLAVTSRFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGT 547          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.278e-36
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 369
            QI++LGTGKK  E+ L   E  YP+K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT
Sbjct:  430 QIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGT 552          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.629e-36
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 369
            QI++LGTGKK  E+ L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V TT++RA+   GT
Sbjct:  437 QIVLLGTGKKKFERLLKSVEEKFPTKVRAVVRFNAPLAHQMMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVVTTLKRAVKVVGT 559          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.290e-35
Identity = 73/123 (59.35%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 369
            QI++LGTGKK  E+ L   E  +P K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT
Sbjct:  427 QIVLLGTGKKKFERMLMSAEEKFPGKVRAVVKFNAALAHHIMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGT 549          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            Q+++LG+G+K  E  +   E L+ +K R    FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+PIV STGGL DTV++     Q G          P+    +  T++ A+ TY
Sbjct:  478 QVVMLGSGEKQYEDWMRHTENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLLDTLKLAIGTY 598          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            Q ++LG+G    E  +  +E  Y +K RG   FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+P+V  TGGL DTVE      + G+ +       P+   ++ + +R A ATY
Sbjct:  489 QFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATY 609          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.070e-21
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            Q++VLG+G K  E+  E+     PE+      ++ PLAH+I AGAD  L+PSRFEPCGL QL++ RYGTVPIV   GGL DTVE+  T  ++ +        +P   A +   V RALA Y
Sbjct:  323 QLVVLGSGDKEFERCFERAAAARPERIAVTIGYDEPLAHLIEAGADIFLMPSRFEPCGLNQLYSQRYGTVPIVRKVGGLADTVEDA-TPERLAAGQASGIVFEPAKPAFLLEAVYRALALY 442          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.531e-21
Identity = 44/84 (52.38%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 252
            Q+++LGTG++ +E+ L Q E  + +K RG   F++  +H I AGAD +L+PSRFEPCGL QL+AM+YGT+P+V + GGL DTV+
Sbjct:  612 QLVMLGTGRRDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTVQ 695          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 252
            Q+I+LGTG++ +E  L +LE  + ++ RG   F+I LAH + AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTVE
Sbjct:  594 QLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVE 677          
The following BLAST results are available for this feature:
BLAST of GO241781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SSG1_ORYGL9.250e-3861.79Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU2.691e-3760.16Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI2.278e-3660.16Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT6.629e-3658.54Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE3.290e-3559.35Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSY1_SOLTU1.098e-2244.63Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH2.446e-2243.80Soluble starch synthase, chloroplastic/amyloplasti... [more]
GLGA1_METCA2.070e-2145.45Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]
SSY2_SOLTU3.531e-2152.38Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY21_ORYSJ4.612e-2157.14Soluble starch synthase 2-1, chloroplastic/amylopl... [more]

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Properties
Property NameValue
Genbank description429 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 565 5, mRNA sequence.