GO241781

Overview
NameGO241781
Unique NameGO241781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            +++ +G+G+ P+E+ L  L+  YP++      F+  L+H++ AGADF L+PSR+EPCGL Q++++RYGTVPIV +TGGLVDTVE G  G  +          +    +A+   +RRALA Y
Sbjct:  328 RVVGVGSGEGPLEEGLLALQSRYPKQVGVHIGFDPGLSHLVEAGADFFLMPSRYEPCGLNQMYSLRYGTVPIVRATGGLVDTVEGGLDGNGI--------LFEAFHKSALLAAIRRALALY 440          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY
Sbjct:  479 QFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTY 598          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY
Sbjct:  479 QFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTY 598          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.027e-20
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 249
            Q+++LGTG+  +E+ L + E  + +K RG   F++ LAH I AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTV
Sbjct:  539 QVVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTV 621          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.342e-20
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 363
            Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+
Sbjct:  485 QFVMLGSGDPIFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTF 604          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   16 GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS 288
            GTG+   E ++ +L+  YP K      F+  LAH I AGAD +L+PSR+EPCGL QL AMRYGT+PI   TGGL DTVE+  TGF    +S
Sbjct:  347 GTGESYYEHKIRELQNSYPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS 437          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 294
            QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  354 QIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA_XANOP (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glgA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 294
            QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  354 QIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 294
            QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  354 QIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of GO241781 vs. ExPASy Swiss-Prot
Match: GLGA_XANC5 (Glycogen synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 294
            QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  354 QIAVIGGGEPEIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
The following BLAST results are available for this feature:
BLAST of GO241781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_MYXXD4.612e-2142.98Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
SSY1_ORYSJ6.024e-2143.80Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI6.024e-2143.80Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY22_ORYSJ1.027e-2055.42Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
SSY1_WHEAT1.342e-2043.80Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_THEYD1.753e-2052.75Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_XANOR2.289e-2047.96Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOP2.289e-2047.96Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM2.289e-2047.96Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANC52.289e-2047.96Glycogen synthase OS=Xanthomonas campestris pv. ve... [more]

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Properties
Property NameValue
Genbank description429 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 565 5, mRNA sequence.