GO241712

Overview
NameGO241712
Unique NameGO241712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  249 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 692
            LTGH + +  V         +S S D  +++WD   G+  R   GHT  V  + F      + S S D TIKLW+    +C  T+     H   VSCVRF+P+  Q  ++S+S D+T+KVW  +      TL GH  +V  + VS DGS
Sbjct:  102 LTGHRNCINSVKFHPSFSLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGS 245          

HSP 2 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 66/225 (29.33%), Postives = 99/225 (44.00%), Query Frame = 3
Query:  102 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS-------PNTLQPT---------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 689
            T++ HT+ V  I       +++ + S D +I +W      +TY   +  L GH H V  V  +  G   +S S D  +++W+ A G   +  VGH   V  +  S D   I S S D+TIK WN + GEC  T +E   H+  V C+ FS       P +L  T                     + + S D+T+K+W L+  +  AT  GH  +V  V   P G
Sbjct:  143 TLKGHTNAVQDIDFD-KTGNLLASCSADLTIKLWDF----QTYDCVKT-LHGHDHNVSCVRFTPSGDQLISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYRE---HSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCG 358          

HSP 3 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  162 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 680
            ++V+AS D +I VW         G   R L GH++ VQD+     G    S S D  ++LWD       +   GH  +V  V F+    Q++S+SRD+TIK+W       Y I+    H +WV  +  S +     I S S D+T+K WN+   +  AT   H+  V  +A S
Sbjct:  120 LMVSASEDATIKVWDFES-----GEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLHGHDHNVSCVRFTPSGDQLISSSRDKTIKVWE--AATGYCIKTLVGHEDWVRKITVSED--GSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 54/147 (36.73%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  249 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 689
            LTGH   V  V +SS      S S DG + LW   +G+  R F GHT  +  V FS + +   +A +D+T+K+W+  G    T++    H + V  V FSP+     + S S DRTV++W+  + K  A L GHT  V+    SPDG
Sbjct:  556 LTGHRDGVTSVAISSHKNLIASASRDGTVHLWT-PQGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGNLLQTLK---GHQDSVYSVSFSPD--GEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDG 696          

HSP 2 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 65/254 (25.59%), Postives = 110/254 (43.31%), Query Frame = 3
Query:   48 TESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS----------------------------------------NCKLRATLAGHTGYVNTVAVSPDG 689
            T    ++ ++   +  K  +  H D VT++A    + ++I +ASRD ++ +W         G   R  TGH+  +  V  S +G+   +   D  +++WDL +G   +   GH   V SV+FS D   + S SRDRT++LW+        +  G  HT+ V   +FSP+    T+VS   D  +++W+L                                           +++ATL+GH  +V  V  +PDG
Sbjct:  537 TSPLVSLQQILSQIAEKNVLTGHRDGVTSVAIS-SHKNLIASASRDGTVHLW------TPQGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDL-DGNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGG--HTKSVDDAQFSPD--GQTLVSVCRDGQIRLWDLDGNLIRQFGLPEVAFFGVNWHPNGNLLAVAADDGTVRLWTPQGEIKATLSGHDEFVTRVVFTPDG 778          

HSP 3 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 44/105 (41.90%), Postives = 55/105 (52.38%), Query Frame = 3
Query:  381 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 695
            GH   V SVA S     I SASRD T+ LW   GE    ++E   HT  +  V FSPN       +A  D+TVK+W+L    L  TL GH   V +V+ SPDG +
Sbjct:  558 GHRDGVTSVAISSHKNLIASASRDGTVHLWTPQGEF---LREFTGHTGSIYRVDFSPNG--KIFATAGQDQTVKIWDLDG-NLLQTLKGHQDSVYSVSFSPDGEI 656          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 61/195 (31.28%), Postives = 94/195 (48.21%), Query Frame = 3
Query:  126 VTAIATPIDN------SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 689
            +T   TP+++       ++IV  S+  S+ +W L   +       R L GH   V  +     G+F  SGS D  ++LWD+       R+ GHT+ V  + FS D + + SAS D ++KLW+ T G+    + E   H   V+ + F PN  +  + S S DRTV+ W+L   +L     G T  V  +  S DG
Sbjct:   59 LTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDLEAAK-----ILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE---HKGPVNIIEFHPN--EYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDG 243          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  249 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 698
            L GH   V  V +S + ++  + S DG +++W     +      GH + +  V ++  ++ + SAS D+TI++W+    C     +G  HT +VS + F+P  L   +VS SWD TV++WNL +      L  H+  + +V++S DG+LC
Sbjct:   50 LFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKG--HTNYVSSIDFNP--LGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLC 195          

HSP 2 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  156 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQE 506
            S  + +AS DK+I +W   K       + R L GH+++V  +  +  G   +SGSWD  +R+W+L +G   R    H++ ++SV+ S D     +AS D   ++W+ L G+C  T+ E
Sbjct:  108 SKYLASASDDKTIRIWDFEKR-----CSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVE 220          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 55/215 (25.58%), Postives = 98/215 (45.58%), Query Frame = 3
Query:  102 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 689
            +++ HTD V  +A       ++ + S D SI +W   +  +      + + GH H V  V     G + LS S D  +++W++A G   + + GH + V  V   I+     + S D+TI++W T   +CK  +++   H   V C+ ++P                      P + S S D+T+++W++S      TL+GH  +V  +A  P G
Sbjct:  145 SLKGHTDSVQDVAFDAQGK-LLASCSADLSIKLWDFQQSYECI----KTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRD---HEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGG 351          

HSP 2 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 3
Query:  162 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEG-KSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 692
            ++V+AS D +I +W         G   R L GH+  VQDV   + G+   S S D  ++LWD  +  +  +   GH  +V SVAF      ++SASRDRTIK+W       Y ++    H EWV  VR     ++ +I  + S D+T++VW  ++   +  L  H   V  +A +P+ +
Sbjct:  122 LMVSASEDATIRIWDFET-----GEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVA--TGYCVKTYTGHREWVRMVRVH---IEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAA 290          

HSP 3 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 57/177 (32.20%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  183 DKSIIVWHLTKEEKTYGVARRR------LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 695
            +K +I    TK ++T G    R      LTGH   +  V+        +S S D  +R+WD   G+  R   GHT  V  VAF    + + S S D +IKLW+   +    I+    H   VS V F P      ++SAS DRT+K+W ++      T  GH  +V  V V  +GS+
Sbjct:   76 EKEVIEGAPTKNKRTPGEWIPRPPEKFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWD-FQQSYECIKTMHGHDHNVSSVAFVP--AGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSI 249          

HSP 4 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 60/212 (28.30%), Postives = 102/212 (48.11%), Query Frame = 3
Query:  102 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSAR---RFVGHTKD-----------VLSVAFSIDNRQ-------IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 671
            TM  H   V+++A  +   D +++ASRD++I +W     E   G   +  TGH  +V+ V +  +G    + S D  +R+W L   K  +   R   HT +            ++ A   DN++       + S SRD+TI++W+ ++G C  T+     H  WV  + F P      +VSAS D+T++VW+L N +   TL  H  +  ++
Sbjct:  188 TMHGHDHNVSSVAF-VPAGDYVLSASRDRTIKMW-----EVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVW-LTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLS---GHDNWVRGLAFHPGGKY--LVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSI 387          

HSP 5 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 56/207 (27.05%), Postives = 94/207 (45.41%), Query Frame = 3
Query:   51 ESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------------------GQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 608
            + T  + ++A G  +K T   H + V  +   I+ S +  T S D++I VW    ++      +  L  H H V+ +  + +                    G F  SGS D  +R+WD++ G       GH   V  +AF    + +VSAS D+TI++W+   + C  T+    AH  + + + F  +   P ++S S D+TVKVW
Sbjct:  214 DRTIKMWEVATGYCVK-TYTGHREWVRMVRVHIEGS-IFATCSNDQTIRVWLTNSKD-----CKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTLY---AHQHFCTSIDF--HKAHPYVISGSVDQTVKVW 408          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 62/195 (31.79%), Postives = 93/195 (47.69%), Query Frame = 3
Query:  126 VTAIATPIDN------SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 689
            +T   TP+++       ++IV  S+  S+ VW L   +       R L GH   V  +     G F  SGS D  ++LWD+       R+ GHT+ V  + FS D + + SAS D ++KLW+ T G+    + E   H   V+ + F PN  +  + S S DRTV+ W+L   +L     G T  V  +  S DG
Sbjct:   59 LTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAK-----ILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE---HKGPVNIIEFHPN--EYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDG 243          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 67/210 (31.90%), Postives = 105/210 (50.00%), Query Frame = 3
Query:   45 NTESTFAIGKMAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS-SDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 668
            + + T A+   A G  +  T+  H+  V+ +A    N   + TA+ D S+ +W     +   G   R LTGH+++V       + G    SGS+D  LRLWD+  G+  R    H+  V S AFS D   +V++S D  I+LW+T  G C  T+ + D+    VS   F+PN     ++  + D   K+W+ +  + R T AG  G+VNT
Sbjct:   59 SADRTVALWDAATGARVN-TLAGHSCGVSDVAWN-PNGRYLATAADDHSLKLW-----DAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPP--VSFAAFTPNA--KYVLCNTLDGRAKLWDYAAGRTRRTYAG--GHVNT 255          

HSP 2 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 48/150 (32.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  249 LTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 695
            L+GH+  V  V  S DG    SGS D  + LWD A G       GH+  V  VA++ + R + +A+ D ++KLW+   G C  T+     HT +V C  F        + S S+D T+++W++ + +    +  H+  V + A S DGS+
Sbjct:   36 LSGHTKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTL---TGHTNYVFCCNFD-GAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSM 181          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: GBLP_ENCCU (Guanine nucleotide-binding protein subunit beta-like protein OS=Encephalitozoon cuniculi GN=ECU08_1110 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 58/186 (31.18%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  105 MRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHL-TKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 647
            +  H D V  +    +   +++ ++SRDK +  W L +K +  +G + +    GHS  +  + +S DG   ++   DG  R+WD  E K +    GH +DVL V+ + ++ +IV+ S DRT+ L+NT G+   K        H  W++CV F P T +  + S S D TVK+W+L   +   T  G
Sbjct:   12 LNGHKDEVKGLKIVRVSGREILYSSSRDKKVFSWDLHSKIDSEFGKILKLYDGGHSKRINGLDVSKDGNMMVTVGSDGIGRIWD-TESKKSILLEGHGRDVLCVSINSNDTKIVTGSVDRTMNLYNTKGDLVLKMGRDMEMMHRGWINCVTFHP-TEESILASGSADGTVKIWDLDTQEHLQTYLG 195          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 59/190 (31.05%), Postives = 91/190 (47.89%), Query Frame = 3
Query:  267 FVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-LGEC--KYTIQEG-----------------------------------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------------LRATLAGHTGYVNTVAVSPD 686
            +V+ +  S DG++ ++G+ D +++LWDL+  K    F GH +D+ S+ FS + R IVS S DRT +LW+   G+C  K  I+ G                                   + H E V  + FSP++    ++S S D+T+KVW L   +             +AT  GHT +V +VAVSPD
Sbjct:  362 YVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPDS--SILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPD 549          

HSP 2 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  105 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE-------KTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 473
            +  H + V +IA   D+S ++++ S DK+I VW L           K  G+ +   TGH+ FV  V +S D ++ LSGS D  ++ WDL  G+S     GH   V+SV FS D RQ  S S D   ++W+
Sbjct:  480 LEGHKESVYSIAFSPDSS-ILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQFASGSGDLRARIWS 608          
BLAST of GO241712 vs. ExPASy Swiss-Prot
Match: PLRG1_MOUSE (Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 66/232 (28.45%), Postives = 102/232 (43.97%), Query Frame = 3
Query:   15 TNPNSRGEKKNTESTFAIGKMAEGLV---------LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAEGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 683
            T  NS  E  NT+++  + K A  +          L   +  H   V  IA    N    VT S D++I +W L       G  +  LTGH   V+ V++S+   +  S   D +++ WDL   K  R + GH   V  +        +V+ SRD T ++W+     K ++     HT  V+ VR      +P I++ S D T+++W+L   K R TL  H   V  V + P
Sbjct:  160 TAMNSIMETGNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ-WFVTGSADRTIKIWDLAS-----GKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWDV--RTKASVHTLSGHTNAVATVRC--QAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHP 381          
The following BLAST results are available for this feature:
BLAST of GO241712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
LIS1_DICDI9.239e-1835.57Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
Y143_SYNY31.576e-1736.73Uncharacterized WD repeat-containing protein slr01... [more]
KTNB1_XENLA2.058e-1731.28Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
SWD3_SCHPO3.511e-1731.33Set1 complex component swd3 OS=Schizosaccharomyces... [more]
LIS1_DROME3.511e-1725.58Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
KTNB1_XENTR4.585e-1731.79Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
MUT11_CHLRE5.989e-1731.90Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
GBLP_ENCCU7.822e-1731.18Guanine nucleotide-binding protein subunit beta-li... [more]
TUP11_SCHPO1.022e-1631.05Transcriptional repressor tup11 OS=Schizosaccharom... [more]
PLRG1_MOUSE1.022e-1628.45Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank description360 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 490 5, mRNA sequence.